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Cluster: Rep_3050_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3050_c_1 Rep_3050_c_1_933 1064053 1066488 - GH94
TF Rep_3050_c_1 Rep_3050_c_1_934 1067058 1068074 + LacI
NULL(UNKNOWN) Rep_3050_c_1 Rep_3050_c_1_935 1068169 1069626 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3050_c_1 Rep_3050_c_1_936 1069770 1070747 + 3.A.1.1.4
TC Rep_3050_c_1 Rep_3050_c_1_937 1070767 1071657 + 3.A.1.1.48
CAZyme Rep_3050_c_1 Rep_3050_c_1_938 1071808 1073163 + GH1
NULL(UNKNOWN) Rep_3050_c_1 Rep_3050_c_1_939 1073216 1073803 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3050_c_1 Rep_3050_c_1_940 1073875 1075536 - FTHFS
CAZyme Rep_3050_c_1 Rep_3050_c_1_941 1075936 1076724 - GT2
pfam Rep_3050_c_1 Rep_3050_c_1_942 1076819 1077748 - HTS
TC Rep_3050_c_1 Rep_3050_c_1_943 1078204 1080816 + 3.A.9.1.2
Gene ID: Rep_3050_c_1_933
Type: CAZyme
Location: 1064053 - 1066488 (-)
Gene ID: Rep_3050_c_1_934
Type: TF
Location: 1067058 - 1068074 (+)
Gene ID: Rep_3050_c_1_935
Type:
Location: 1068169 - 1069626 (+)
Gene ID: Rep_3050_c_1_936
Type: TC
Location: 1069770 - 1070747 (+)
Gene ID: Rep_3050_c_1_937
Type: TC
Location: 1070767 - 1071657 (+)
Gene ID: Rep_3050_c_1_938
Type: CAZyme
Location: 1071808 - 1073163 (+)
Gene ID: Rep_3050_c_1_939
Type:
Location: 1073216 - 1073803 (+)
Gene ID: Rep_3050_c_1_940
Type: pfam
Location: 1073875 - 1075536 (-)
Gene ID: Rep_3050_c_1_941
Type: CAZyme
Location: 1075936 - 1076724 (-)
Gene ID: Rep_3050_c_1_942
Type: pfam
Location: 1076819 - 1077748 (-)
Gene ID: Rep_3050_c_1_943
Type: TC
Location: 1078204 - 1080816 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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