Genome Details
Selected Rep_genome_ID: HRGMv2_3899
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3899 | 3,478,070 | 93.42% | 1.115% | UK | Europe | HRGM |
| Rep_437 | 3,647,221 | 91.3404% | 4.08922% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3899_CGC35 | CGCFAM_00025 | Yes | 5 | 2 | pectin/alpha-glucan |
| HRGMv2_3899_CGC10 | CGCFAM_00044 | Yes | 15 | 7 | beta-mannan/xylan/beta-glucan |
| HRGMv2_3899_CGC4 | CGCFAM_00080 | Yes | 3 | 1 | |
| HRGMv2_3899_CGC26 | CGCFAM_00111 | Yes | 6 | 2 | alpha-glucan |
| HRGMv2_3899_CGC16 | CGCFAM_00150 | Yes | 10 | 2 | |
| HRGMv2_3899_CGC27 | CGCFAM_00170 | Yes | 10 | 4 | |
| HRGMv2_3899_CGC5 | CGCFAM_00306 | Yes | 21 | 14 | |
| HRGMv2_3899_CGC3 | CGCFAM_00361 | Yes | 5 | 2 | |
| HRGMv2_3899_CGC13 | CGCFAM_00552 | Yes | 4 | 1 | |
| HRGMv2_3899_CGC38 | CGCFAM_00756 | Yes | 4 | 1 | |
| HRGMv2_3899_CGC19 | CGCFAM_01225 | Yes | 7 | 1 | |
| HRGMv2_3899_CGC20 | CGCFAM_01613 | Yes | 3 | 1 | |
| HRGMv2_3899_CGC33 | CGCFAM_02587 | Yes | 4 | 3 | |
| HRGMv2_3899_CGC12 | CGCFAM_02825 | Yes | 6 | 2 | |
| HRGMv2_3899_CGC37 | CGCFAM_02873 | Yes | 3 | 1 | |
| HRGMv2_3899_CGC30 | CGCFAM_02962 | Yes | 7 | 2 | |
| HRGMv2_3899_CGC25 | CGCFAM_06550 | Yes | 10 | 6 | |
| HRGMv2_3899_CGC2 | CGCFAM_08846 | Yes | 6 | 2 |
Top CAZyme Families