Cluster: HRGMv2_3899_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_08846
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_1 | HRGMv2_3899_1_46 | 57605 | 60898 | - | 3.A.5.1.1 |
| pfam | HRGMv2_3899_1 | HRGMv2_3899_1_47 | 61208 | 62797 | - | Phosphodiest |
| pfam | HRGMv2_3899_1 | HRGMv2_3899_1_48 | 62794 | 63987 | - | Lnb_N |
| CAZyme | HRGMv2_3899_1 | HRGMv2_3899_1_49 | 64454 | 67051 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_3899_1 | HRGMv2_3899_1_50 | 67681 | 67986 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3899_1 | HRGMv2_3899_1_51 | 69237 | 70751 | + | CE8 |
Gene ID: HRGMv2_3899_1_46
Type: TC
Location: 57605 - 60898 (-)
Type: TC
Location: 57605 - 60898 (-)
Gene ID: HRGMv2_3899_1_47
Type: pfam
Location: 61208 - 62797 (-)
Type: pfam
Location: 61208 - 62797 (-)
Gene ID: HRGMv2_3899_1_48
Type: pfam
Location: 62794 - 63987 (-)
Type: pfam
Location: 62794 - 63987 (-)
Gene ID: HRGMv2_3899_1_49
Type: CAZyme
Location: 64454 - 67051 (+)
Type: CAZyme
Location: 64454 - 67051 (+)
Gene ID: HRGMv2_3899_1_50
Type:
Location: 67681 - 67986 (-)
Type:
Location: 67681 - 67986 (-)
Gene ID: HRGMv2_3899_1_51
Type: CAZyme
Location: 69237 - 70751 (+)
Type: CAZyme
Location: 69237 - 70751 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.