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Cluster: HRGMv2_3899_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3899_30 HRGMv2_3899_30_7 6197 7093 - 2.A.115.1.2
pfam HRGMv2_3899_30 HRGMv2_3899_30_8 7126 10152 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2
pfam HRGMv2_3899_30 HRGMv2_3899_30_9 10828 11499 - DUF3826
CAZyme HRGMv2_3899_30 HRGMv2_3899_30_10 11811 13547 - PL1_2
NULL(UNKNOWN) HRGMv2_3899_30 HRGMv2_3899_30_11 13642 13848 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3899_30 HRGMv2_3899_30_12 14151 16181 - SusD_RagB | SusD-like_3
TC HRGMv2_3899_30 HRGMv2_3899_30_13 16197 19838 - 1.B.14.6.1
Gene ID: HRGMv2_3899_30_7
Type: TC
Location: 6197 - 7093 (-)
Gene ID: HRGMv2_3899_30_8
Type: pfam
Location: 7126 - 10152 (-)
Gene ID: HRGMv2_3899_30_9
Type: pfam
Location: 10828 - 11499 (-)
Gene ID: HRGMv2_3899_30_10
Type: CAZyme
Location: 11811 - 13547 (-)
Gene ID: HRGMv2_3899_30_11
Type:
Location: 13642 - 13848 (-)
Gene ID: HRGMv2_3899_30_12
Type: pfam
Location: 14151 - 16181 (-)
Gene ID: HRGMv2_3899_30_13
Type: TC
Location: 16197 - 19838 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3899_30_10 vegan > omnivore 1.14642 0.01867

🧭 Explore Read Mapping of CGC

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