Cluster: HRGMv2_3899_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00552
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_17 | HRGMv2_3899_17_2 | 110 | 2353 | + | GH31_3 |
| NULL(UNKNOWN) | HRGMv2_3899_17 | HRGMv2_3899_17_3 | 2380 | 3444 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_3899_17 | HRGMv2_3899_17_4 | 3468 | 4106 | + | B12-binding | B12-binding_2 |
| TC | HRGMv2_3899_17 | HRGMv2_3899_17_5 | 4131 | 5699 | + | 2.A.21.3.19 |
Gene ID: HRGMv2_3899_17_2
Type: CAZyme
Location: 110 - 2353 (+)
Type: CAZyme
Location: 110 - 2353 (+)
Gene ID: HRGMv2_3899_17_3
Type:
Location: 2380 - 3444 (+)
Type:
Location: 2380 - 3444 (+)
Gene ID: HRGMv2_3899_17_4
Type: STP
Location: 3468 - 4106 (+)
Type: STP
Location: 3468 - 4106 (+)
Gene ID: HRGMv2_3899_17_5
Type: TC
Location: 4131 - 5699 (+)
Type: TC
Location: 4131 - 5699 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.