Cluster: HRGMv2_3899_CGC4
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00080
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_2 | HRGMv2_3899_2_17 | 25320 | 25931 | - | CE4 |
| pfam | HRGMv2_3899_2 | HRGMv2_3899_2_18 | 25942 | 29454 | - | TMEM260-like |
| TC | HRGMv2_3899_2 | HRGMv2_3899_2_19 | 30302 | 31066 | - | 3.A.1.15.2 |
Gene ID: HRGMv2_3899_2_17
Type: CAZyme
Location: 25320 - 25931 (-)
Type: CAZyme
Location: 25320 - 25931 (-)
Gene ID: HRGMv2_3899_2_18
Type: pfam
Location: 25942 - 29454 (-)
Type: pfam
Location: 25942 - 29454 (-)
Gene ID: HRGMv2_3899_2_19
Type: TC
Location: 30302 - 31066 (-)
Type: TC
Location: 30302 - 31066 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.