Cluster: HRGMv2_3899_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate: beta-mannan/xylan/beta-glucan
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00044
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_7 | HRGMv2_3899_7_41 | 48760 | 50115 | + | 2.A.22.5.3 |
| pfam | HRGMv2_3899_7 | HRGMv2_3899_7_42 | 50125 | 51036 | + | HHH_3 | HHH_3 | HHH_3 |
| pfam | HRGMv2_3899_7 | HRGMv2_3899_7_43 | 51211 | 52617 | - | Alk_phosphatase | Alk_phosphatase |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_44 | 52980 | 54989 | - | CBM91 | GH43_12 |
| TF | HRGMv2_3899_7 | HRGMv2_3899_7_45 | 55074 | 59195 | - | HTH_AraC |
| TC | HRGMv2_3899_7 | HRGMv2_3899_7_46 | 59725 | 62868 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3899_7 | HRGMv2_3899_7_47 | 62888 | 64630 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3899_7 | HRGMv2_3899_7_48 | 64680 | 66041 | + | SGBP_B_XBD |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_49 | 66069 | 68429 | + | GH10 |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_50 | 68731 | 70437 | + | GH35 |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_51 | 70470 | 72152 | + | CE20 | CE20 |
| TC | HRGMv2_3899_7 | HRGMv2_3899_7_52 | 72583 | 74004 | + | 2.A.2.3.2 |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_53 | 74342 | 75478 | + | GH10 |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_54 | 75719 | 76690 | + | GH43_1 |
| CAZyme | HRGMv2_3899_7 | HRGMv2_3899_7_55 | 76789 | 78912 | + | GH67 |
Gene ID: HRGMv2_3899_7_41
Type: TC
Location: 48760 - 50115 (+)
Type: TC
Location: 48760 - 50115 (+)
Gene ID: HRGMv2_3899_7_42
Type: pfam
Location: 50125 - 51036 (+)
Type: pfam
Location: 50125 - 51036 (+)
Gene ID: HRGMv2_3899_7_43
Type: pfam
Location: 51211 - 52617 (-)
Type: pfam
Location: 51211 - 52617 (-)
Gene ID: HRGMv2_3899_7_44
Type: CAZyme
Location: 52980 - 54989 (-)
Type: CAZyme
Location: 52980 - 54989 (-)
Gene ID: HRGMv2_3899_7_45
Type: TF
Location: 55074 - 59195 (-)
Type: TF
Location: 55074 - 59195 (-)
Gene ID: HRGMv2_3899_7_46
Type: TC
Location: 59725 - 62868 (+)
Type: TC
Location: 59725 - 62868 (+)
Gene ID: HRGMv2_3899_7_47
Type: pfam
Location: 62888 - 64630 (+)
Type: pfam
Location: 62888 - 64630 (+)
Gene ID: HRGMv2_3899_7_48
Type: pfam
Location: 64680 - 66041 (+)
Type: pfam
Location: 64680 - 66041 (+)
Gene ID: HRGMv2_3899_7_49
Type: CAZyme
Location: 66069 - 68429 (+)
Type: CAZyme
Location: 66069 - 68429 (+)
Gene ID: HRGMv2_3899_7_50
Type: CAZyme
Location: 68731 - 70437 (+)
Type: CAZyme
Location: 68731 - 70437 (+)
Gene ID: HRGMv2_3899_7_51
Type: CAZyme
Location: 70470 - 72152 (+)
Type: CAZyme
Location: 70470 - 72152 (+)
Gene ID: HRGMv2_3899_7_52
Type: TC
Location: 72583 - 74004 (+)
Type: TC
Location: 72583 - 74004 (+)
Gene ID: HRGMv2_3899_7_53
Type: CAZyme
Location: 74342 - 75478 (+)
Type: CAZyme
Location: 74342 - 75478 (+)
Gene ID: HRGMv2_3899_7_54
Type: CAZyme
Location: 75719 - 76690 (+)
Type: CAZyme
Location: 75719 - 76690 (+)
Gene ID: HRGMv2_3899_7_55
Type: CAZyme
Location: 76789 - 78912 (+)
Type: CAZyme
Location: 76789 - 78912 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.