Cluster: HRGMv2_3899_CGC26
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00111
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_54 | HRGMv2_3899_54_7 | 6521 | 9373 | + | GH31_4 |
| CAZyme | HRGMv2_3899_54 | HRGMv2_3899_54_8 | 9411 | 11627 | + | GH3 |
| TF | HRGMv2_3899_54 | HRGMv2_3899_54_9 | 11947 | 12507 | + | GerE |
| STP | HRGMv2_3899_54 | HRGMv2_3899_54_10 | 13039 | 14205 | + | FecR |
| TC | HRGMv2_3899_54 | HRGMv2_3899_54_11 | 14220 | 17540 | + | 1.B.14.6.1 |
| TC | HRGMv2_3899_54 | HRGMv2_3899_54_12 | 17556 | 19022 | + | 8.A.46.3.3 |
Gene ID: HRGMv2_3899_54_7
Type: CAZyme
Location: 6521 - 9373 (+)
Type: CAZyme
Location: 6521 - 9373 (+)
Gene ID: HRGMv2_3899_54_8
Type: CAZyme
Location: 9411 - 11627 (+)
Type: CAZyme
Location: 9411 - 11627 (+)
Gene ID: HRGMv2_3899_54_9
Type: TF
Location: 11947 - 12507 (+)
Type: TF
Location: 11947 - 12507 (+)
Gene ID: HRGMv2_3899_54_10
Type: STP
Location: 13039 - 14205 (+)
Type: STP
Location: 13039 - 14205 (+)
Gene ID: HRGMv2_3899_54_11
Type: TC
Location: 14220 - 17540 (+)
Type: TC
Location: 14220 - 17540 (+)
Gene ID: HRGMv2_3899_54_12
Type: TC
Location: 17556 - 19022 (+)
Type: TC
Location: 17556 - 19022 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.