Cluster: HRGMv2_3899_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00361
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_2 | HRGMv2_3899_2_9 | 9577 | 12810 | + | 1.B.14.6.1 |
| TC | HRGMv2_3899_2 | HRGMv2_3899_2_10 | 12833 | 14617 | + | 8.A.46.1.3 |
| pfam | HRGMv2_3899_2 | HRGMv2_3899_2_11 | 14601 | 16199 | + | fn3 | DUF5123 |
| CAZyme | HRGMv2_3899_2 | HRGMv2_3899_2_12 | 16601 | 18208 | + | PL1_2 |
| CAZyme | HRGMv2_3899_2 | HRGMv2_3899_2_13 | 18734 | 20146 | + | PL1_2 |
Gene ID: HRGMv2_3899_2_9
Type: TC
Location: 9577 - 12810 (+)
Type: TC
Location: 9577 - 12810 (+)
Gene ID: HRGMv2_3899_2_10
Type: TC
Location: 12833 - 14617 (+)
Type: TC
Location: 12833 - 14617 (+)
Gene ID: HRGMv2_3899_2_11
Type: pfam
Location: 14601 - 16199 (+)
Type: pfam
Location: 14601 - 16199 (+)
Gene ID: HRGMv2_3899_2_12
Type: CAZyme
Location: 16601 - 18208 (+)
Type: CAZyme
Location: 16601 - 18208 (+)
Gene ID: HRGMv2_3899_2_13
Type: CAZyme
Location: 18734 - 20146 (+)
Type: CAZyme
Location: 18734 - 20146 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.