dbCAN Logo

Cluster: HRGMv2_3899_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3899_58 HRGMv2_3899_58_10 8942 9718 - 9.B.104.3.2
CAZyme HRGMv2_3899_58 HRGMv2_3899_58_11 9819 11822 + GH133
CAZyme HRGMv2_3899_58 HRGMv2_3899_58_12 11839 13110 + GT4
CAZyme HRGMv2_3899_58 HRGMv2_3899_58_13 13127 14503 + GH57
pfam HRGMv2_3899_58 HRGMv2_3899_58_14 15256 16737 - DUF4270
CAZyme HRGMv2_3899_58 HRGMv2_3899_58_15 16682 17503 - GT5
pfam HRGMv2_3899_58 HRGMv2_3899_58_16 17751 18599 + Pantoate_ligase
pfam HRGMv2_3899_58 HRGMv2_3899_58_17 18613 18963 + Asp_decarbox
TC HRGMv2_3899_58 HRGMv2_3899_58_18 19445 20605 - 3.B.1.1.2
TC HRGMv2_3899_58 HRGMv2_3899_58_19 20607 21050 - 3.B.1.1.2
Gene ID: HRGMv2_3899_58_10
Type: TC
Location: 8942 - 9718 (-)
Gene ID: HRGMv2_3899_58_11
Type: CAZyme
Location: 9819 - 11822 (+)
Gene ID: HRGMv2_3899_58_12
Type: CAZyme
Location: 11839 - 13110 (+)
Gene ID: HRGMv2_3899_58_13
Type: CAZyme
Location: 13127 - 14503 (+)
Gene ID: HRGMv2_3899_58_14
Type: pfam
Location: 15256 - 16737 (-)
Gene ID: HRGMv2_3899_58_15
Type: CAZyme
Location: 16682 - 17503 (-)
Gene ID: HRGMv2_3899_58_16
Type: pfam
Location: 17751 - 18599 (+)
Gene ID: HRGMv2_3899_58_17
Type: pfam
Location: 18613 - 18963 (+)
Gene ID: HRGMv2_3899_58_18
Type: TC
Location: 19445 - 20605 (-)
Gene ID: HRGMv2_3899_58_19
Type: TC
Location: 20607 - 21050 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List