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Cluster: HRGMv2_3899_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3899_23 HRGMv2_3899_23_16 20677 21846 + 1.B.6.1.6
CAZyme HRGMv2_3899_23 HRGMv2_3899_23_17 22396 24747 - GH139
TC HRGMv2_3899_23 HRGMv2_3899_23_18 25697 27418 - 8.A.46.1.3
TC HRGMv2_3899_23 HRGMv2_3899_23_19 27439 30459 - 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_3899_23 HRGMv2_3899_23_20 30783 32408 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3899_23 HRGMv2_3899_23_21 32419 34422 - PL33_1
STP HRGMv2_3899_23 HRGMv2_3899_23_22 35001 35543 + Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_3899_23 HRGMv2_3899_23_23 35591 36706 + FecR
TC HRGMv2_3899_23 HRGMv2_3899_23_24 36776 40156 + 1.B.14.6.1
TC HRGMv2_3899_23 HRGMv2_3899_23_25 40169 41614 + 8.A.46.3.3
Gene ID: HRGMv2_3899_23_16
Type: TC
Location: 20677 - 21846 (+)
Gene ID: HRGMv2_3899_23_17
Type: CAZyme
Location: 22396 - 24747 (-)
Gene ID: HRGMv2_3899_23_18
Type: TC
Location: 25697 - 27418 (-)
Gene ID: HRGMv2_3899_23_19
Type: TC
Location: 27439 - 30459 (-)
Gene ID: HRGMv2_3899_23_20
Type:
Location: 30783 - 32408 (-)
Gene ID: HRGMv2_3899_23_21
Type: CAZyme
Location: 32419 - 34422 (-)
Gene ID: HRGMv2_3899_23_22
Type: STP
Location: 35001 - 35543 (+)
Gene ID: HRGMv2_3899_23_23
Type: STP
Location: 35591 - 36706 (+)
Gene ID: HRGMv2_3899_23_24
Type: TC
Location: 36776 - 40156 (+)
Gene ID: HRGMv2_3899_23_25
Type: TC
Location: 40169 - 41614 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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