Cluster: HRGMv2_3899_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_02825
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_13 | HRGMv2_3899_13_16 | 19513 | 21117 | - | GH28 |
| pfam | HRGMv2_3899_13 | HRGMv2_3899_13_17 | 21250 | 22188 | + | DHDPS |
| TC | HRGMv2_3899_13 | HRGMv2_3899_13_18 | 22226 | 23704 | + | 2.A.21.3.7 |
| NULL(UNKNOWN) | HRGMv2_3899_13 | HRGMv2_3899_13_19 | 24484 | 24708 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3899_13 | HRGMv2_3899_13_20 | 24750 | 26954 | + | 3.A.10.1.10 |
| CAZyme | HRGMv2_3899_13 | HRGMv2_3899_13_21 | 27648 | 28577 | + | GH43_18 |
Gene ID: HRGMv2_3899_13_16
Type: CAZyme
Location: 19513 - 21117 (-)
Type: CAZyme
Location: 19513 - 21117 (-)
Gene ID: HRGMv2_3899_13_17
Type: pfam
Location: 21250 - 22188 (+)
Type: pfam
Location: 21250 - 22188 (+)
Gene ID: HRGMv2_3899_13_18
Type: TC
Location: 22226 - 23704 (+)
Type: TC
Location: 22226 - 23704 (+)
Gene ID: HRGMv2_3899_13_19
Type:
Location: 24484 - 24708 (-)
Type:
Location: 24484 - 24708 (-)
Gene ID: HRGMv2_3899_13_20
Type: TC
Location: 24750 - 26954 (+)
Type: TC
Location: 24750 - 26954 (+)
Gene ID: HRGMv2_3899_13_21
Type: CAZyme
Location: 27648 - 28577 (+)
Type: CAZyme
Location: 27648 - 28577 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.