Cluster: HRGMv2_3899_CGC33
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_02587
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_84 | HRGMv2_3899_84_1 | 2 | 1345 | + | PL10_1 |
| CAZyme | HRGMv2_3899_84 | HRGMv2_3899_84_2 | 1405 | 2751 | + | CE8 |
| CAZyme | HRGMv2_3899_84 | HRGMv2_3899_84_3 | 2807 | 5287 | + | GH95 |
| TC | HRGMv2_3899_84 | HRGMv2_3899_84_4 | 5753 | 8986 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3899_84_1
Type: CAZyme
Location: 2 - 1345 (+)
Type: CAZyme
Location: 2 - 1345 (+)
Gene ID: HRGMv2_3899_84_2
Type: CAZyme
Location: 1405 - 2751 (+)
Type: CAZyme
Location: 1405 - 2751 (+)
Gene ID: HRGMv2_3899_84_3
Type: CAZyme
Location: 2807 - 5287 (+)
Type: CAZyme
Location: 2807 - 5287 (+)
Gene ID: HRGMv2_3899_84_4
Type: TC
Location: 5753 - 8986 (+)
Type: TC
Location: 5753 - 8986 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.