Cluster: HRGMv2_3899_CGC25
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_06550
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_52 | HRGMv2_3899_52_1 | 188 | 2743 | - | GH116 |
| CAZyme | HRGMv2_3899_52 | HRGMv2_3899_52_2 | 2769 | 4586 | - | GH20 |
| NULL(UNKNOWN) | HRGMv2_3899_52 | HRGMv2_3899_52_3 | 4579 | 4842 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3899_52 | HRGMv2_3899_52_4 | 4946 | 7189 | - | GH3 |
| CAZyme | HRGMv2_3899_52 | HRGMv2_3899_52_5 | 7227 | 8414 | - | GH172 |
| CAZyme | HRGMv2_3899_52 | HRGMv2_3899_52_6 | 8433 | 9629 | - | GH33 |
| TC | HRGMv2_3899_52 | HRGMv2_3899_52_7 | 9713 | 11203 | - | 8.A.46.1.4 |
| TC | HRGMv2_3899_52 | HRGMv2_3899_52_8 | 11216 | 14467 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3899_52 | HRGMv2_3899_52_9 | 14557 | 17118 | - | GH116 |
| TC | HRGMv2_3899_52 | HRGMv2_3899_52_10 | 17146 | 18555 | - | 2.A.1.1.42 |
Gene ID: HRGMv2_3899_52_1
Type: CAZyme
Location: 188 - 2743 (-)
Type: CAZyme
Location: 188 - 2743 (-)
Gene ID: HRGMv2_3899_52_2
Type: CAZyme
Location: 2769 - 4586 (-)
Type: CAZyme
Location: 2769 - 4586 (-)
Gene ID: HRGMv2_3899_52_3
Type:
Location: 4579 - 4842 (-)
Type:
Location: 4579 - 4842 (-)
Gene ID: HRGMv2_3899_52_4
Type: CAZyme
Location: 4946 - 7189 (-)
Type: CAZyme
Location: 4946 - 7189 (-)
Gene ID: HRGMv2_3899_52_5
Type: CAZyme
Location: 7227 - 8414 (-)
Type: CAZyme
Location: 7227 - 8414 (-)
Gene ID: HRGMv2_3899_52_6
Type: CAZyme
Location: 8433 - 9629 (-)
Type: CAZyme
Location: 8433 - 9629 (-)
Gene ID: HRGMv2_3899_52_7
Type: TC
Location: 9713 - 11203 (-)
Type: TC
Location: 9713 - 11203 (-)
Gene ID: HRGMv2_3899_52_8
Type: TC
Location: 11216 - 14467 (-)
Type: TC
Location: 11216 - 14467 (-)
Gene ID: HRGMv2_3899_52_9
Type: CAZyme
Location: 14557 - 17118 (-)
Type: CAZyme
Location: 14557 - 17118 (-)
Gene ID: HRGMv2_3899_52_10
Type: TC
Location: 17146 - 18555 (-)
Type: TC
Location: 17146 - 18555 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3899_52_1 | vegan > omnivore | 1.50395 | 0.01867 |
| HRGMv2_3899_52_2 | vegan > omnivore | 1.78100 | 0.01867 |
| HRGMv2_3899_52_3 | vegan > omnivore | 1.88724 | 0.01867 |
| HRGMv2_3899_52_4 | vegan > omnivore | 1.80774 | 0.01867 |
| HRGMv2_3899_52_5 | vegan > omnivore | 1.78759 | 0.01867 |
| HRGMv2_3899_52_6 | vegan > omnivore | 1.74911 | 0.01867 |
| HRGMv2_3899_52_7 | vegan > omnivore | 1.35930 | 0.01867 |
| HRGMv2_3899_52_8 | vegan > omnivore | 1.57607 | 0.01867 |
| HRGMv2_3899_52_9 | vegan > omnivore | 1.81881 | 0.01867 |
| HRGMv2_3899_52_10 | vegan > omnivore | 1.46781 | 0.01867 |