Cluster: HRGMv2_3899_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin/alpha-glucan
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00025
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3899_92 | HRGMv2_3899_92_1 | 45 | 3047 | + | 1.B.14.6.1 |
| TC | HRGMv2_3899_92 | HRGMv2_3899_92_2 | 3059 | 4678 | + | 8.A.46.1.1 |
| pfam | HRGMv2_3899_92 | HRGMv2_3899_92_3 | 4703 | 6313 | + | SusE |
| CAZyme | HRGMv2_3899_92 | HRGMv2_3899_92_4 | 6395 | 7720 | + | GH13 |
| CAZyme | HRGMv2_3899_92 | HRGMv2_3899_92_5 | 7897 | 10476 | + | GH13_10 |
Gene ID: HRGMv2_3899_92_1
Type: TC
Location: 45 - 3047 (+)
Type: TC
Location: 45 - 3047 (+)
Gene ID: HRGMv2_3899_92_2
Type: TC
Location: 3059 - 4678 (+)
Type: TC
Location: 3059 - 4678 (+)
Gene ID: HRGMv2_3899_92_3
Type: pfam
Location: 4703 - 6313 (+)
Type: pfam
Location: 4703 - 6313 (+)
Gene ID: HRGMv2_3899_92_4
Type: CAZyme
Location: 6395 - 7720 (+)
Type: CAZyme
Location: 6395 - 7720 (+)
Gene ID: HRGMv2_3899_92_5
Type: CAZyme
Location: 7897 - 10476 (+)
Type: CAZyme
Location: 7897 - 10476 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.