Cluster: HRGMv2_3899_CGC38
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3899
- CGC Family ID: CGCFAM_00756
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3899_119 | HRGMv2_3899_119_1 | 619 | 2298 | + | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_3899_119 | HRGMv2_3899_119_2 | 2324 | 3424 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3899_119 | HRGMv2_3899_119_3 | 3480 | 5783 | + | Fasciclin |
| TC | HRGMv2_3899_119 | HRGMv2_3899_119_4 | 5804 | 6466 | + | 1.B.14.6.2 |
Gene ID: HRGMv2_3899_119_1
Type: CAZyme
Location: 619 - 2298 (+)
Type: CAZyme
Location: 619 - 2298 (+)
Gene ID: HRGMv2_3899_119_2
Type:
Location: 2324 - 3424 (+)
Type:
Location: 2324 - 3424 (+)
Gene ID: HRGMv2_3899_119_3
Type: pfam
Location: 3480 - 5783 (+)
Type: pfam
Location: 3480 - 5783 (+)
Gene ID: HRGMv2_3899_119_4
Type: TC
Location: 5804 - 6466 (+)
Type: TC
Location: 5804 - 6466 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp947581855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.