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Genome Details

Selected Rep_genome_ID: HRGMv2_3894
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola ilei
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_3894 3,683,663 98% 0.199% UK Europe HRGM
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_3894_CGC51 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3894_CGC52 CGCFAM_00001 Yes 8 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3894_CGC21 CGCFAM_00017 Yes 9 4 fructan
HRGMv2_3894_CGC12 CGCFAM_00025 Yes 11 4 pectin/alpha-glucan
HRGMv2_3894_CGC34 CGCFAM_00059 Yes 8 2
HRGMv2_3894_CGC10 CGCFAM_00101 Yes 13 8 beta-glucan
HRGMv2_3894_CGC46 CGCFAM_00116 Yes 16 5 xylan/beta-glucan
HRGMv2_3894_CGC37 CGCFAM_00197 Yes 7 1
HRGMv2_3894_CGC27 CGCFAM_00225 Yes 6 3 arabinogalactan
HRGMv2_3894_CGC18 CGCFAM_00229 Yes 9 2
HRGMv2_3894_CGC40 CGCFAM_00239 Yes 4 2 xylan
HRGMv2_3894_CGC42 CGCFAM_00608 Yes 7 5
HRGMv2_3894_CGC2 CGCFAM_00755 Yes 6 1
HRGMv2_3894_CGC26 CGCFAM_00764 Yes 7 3
HRGMv2_3894_CGC24 CGCFAM_00873 Yes 9 6
HRGMv2_3894_CGC25 CGCFAM_00940 Yes 10 8
HRGMv2_3894_CGC20 CGCFAM_01035 Yes 4 2
HRGMv2_3894_CGC28 CGCFAM_01220 Yes 10 1
HRGMv2_3894_CGC44 CGCFAM_01307 Yes 9 2
HRGMv2_3894_CGC33 CGCFAM_01308 Yes 7 1
HRGMv2_3894_CGC45 CGCFAM_01701 Yes 4 1
HRGMv2_3894_CGC30 CGCFAM_01914 Yes 3 1
HRGMv2_3894_CGC16 CGCFAM_02452 Yes 4 1
HRGMv2_3894_CGC22 CGCFAM_02865 Yes 11 3
HRGMv2_3894_CGC8 CGCFAM_04187 Yes 17 10 arabinogalactan
Top CAZyme Families