Cluster: HRGMv2_3894_CGC46
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate: xylan/beta-glucan
- Genome ID: HRGMv2_3894
- CGC Family ID: CGCFAM_00116
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3894_36 | HRGMv2_3894_36_3 | 2192 | 5017 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3894_36 | HRGMv2_3894_36_4 | 5046 | 6917 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3894_36 | HRGMv2_3894_36_5 | 6930 | 10073 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_3894_36 | HRGMv2_3894_36_6 | 10372 | 10506 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3894_36 | HRGMv2_3894_36_7 | 10558 | 12180 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_3894_36 | HRGMv2_3894_36_8 | 12483 | 14183 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_3894_36 | HRGMv2_3894_36_9 | 14455 | 16719 | - | GH10 |
| pfam | HRGMv2_3894_36 | HRGMv2_3894_36_10 | 16742 | 17770 | - | BT_3987-like_N | DUF5627 |
| pfam | HRGMv2_3894_36 | HRGMv2_3894_36_11 | 17799 | 19544 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3894_36 | HRGMv2_3894_36_12 | 19589 | 22462 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3894_36 | HRGMv2_3894_36_13 | 22501 | 24444 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3894_36 | HRGMv2_3894_36_14 | 24456 | 27626 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_3894_36 | HRGMv2_3894_36_15 | 27738 | 27830 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3894_36 | HRGMv2_3894_36_16 | 28193 | 32299 | + | HTH_AraC |
| CAZyme | HRGMv2_3894_36 | HRGMv2_3894_36_17 | 32445 | 34064 | - | CE20 | CE20 |
| CAZyme | HRGMv2_3894_36 | HRGMv2_3894_36_18 | 34363 | 36894 | + | GH115 |
Gene ID: HRGMv2_3894_36_3
Type: TC
Location: 2192 - 5017 (-)
Type: TC
Location: 2192 - 5017 (-)
Gene ID: HRGMv2_3894_36_4
Type: pfam
Location: 5046 - 6917 (-)
Type: pfam
Location: 5046 - 6917 (-)
Gene ID: HRGMv2_3894_36_5
Type: TC
Location: 6930 - 10073 (-)
Type: TC
Location: 6930 - 10073 (-)
Gene ID: HRGMv2_3894_36_6
Type:
Location: 10372 - 10506 (+)
Type:
Location: 10372 - 10506 (+)
Gene ID: HRGMv2_3894_36_7
Type: CAZyme
Location: 10558 - 12180 (-)
Type: CAZyme
Location: 10558 - 12180 (-)
Gene ID: HRGMv2_3894_36_8
Type: CAZyme
Location: 12483 - 14183 (+)
Type: CAZyme
Location: 12483 - 14183 (+)
Gene ID: HRGMv2_3894_36_9
Type: CAZyme
Location: 14455 - 16719 (-)
Type: CAZyme
Location: 14455 - 16719 (-)
Gene ID: HRGMv2_3894_36_10
Type: pfam
Location: 16742 - 17770 (-)
Type: pfam
Location: 16742 - 17770 (-)
Gene ID: HRGMv2_3894_36_11
Type: pfam
Location: 17799 - 19544 (-)
Type: pfam
Location: 17799 - 19544 (-)
Gene ID: HRGMv2_3894_36_12
Type: TC
Location: 19589 - 22462 (-)
Type: TC
Location: 19589 - 22462 (-)
Gene ID: HRGMv2_3894_36_13
Type: pfam
Location: 22501 - 24444 (-)
Type: pfam
Location: 22501 - 24444 (-)
Gene ID: HRGMv2_3894_36_14
Type: TC
Location: 24456 - 27626 (-)
Type: TC
Location: 24456 - 27626 (-)
Gene ID: HRGMv2_3894_36_15
Type:
Location: 27738 - 27830 (-)
Type:
Location: 27738 - 27830 (-)
Gene ID: HRGMv2_3894_36_16
Type: TF
Location: 28193 - 32299 (+)
Type: TF
Location: 28193 - 32299 (+)
Gene ID: HRGMv2_3894_36_17
Type: CAZyme
Location: 32445 - 34064 (-)
Type: CAZyme
Location: 32445 - 34064 (-)
Gene ID: HRGMv2_3894_36_18
Type: CAZyme
Location: 34363 - 36894 (+)
Type: CAZyme
Location: 34363 - 36894 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola ilei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.