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Cluster: HRGMv2_3894_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_11 HRGMv2_3894_11_52 62962 63681 + 9.B.186.1.3
CAZyme HRGMv2_3894_11 HRGMv2_3894_11_53 63764 64471 + GT51
TC HRGMv2_3894_11 HRGMv2_3894_11_54 64489 65133 - 1.A.62.2.1
TC HRGMv2_3894_11 HRGMv2_3894_11_55 65178 66620 - 9.B.168.1.2
peptidase HRGMv2_3894_11 HRGMv2_3894_11_56 66887 68485 + C26.964
TC HRGMv2_3894_11 HRGMv2_3894_11_57 68514 70379 + 2.A.9.3.1
peptidase HRGMv2_3894_11 HRGMv2_3894_11_58 70549 72657 + S09.075
pfam HRGMv2_3894_11 HRGMv2_3894_11_59 72711 73310 + MMR_HSR1 | FeoB_N
TC HRGMv2_3894_11 HRGMv2_3894_11_60 73681 74361 + 1.A.8.3.1
TC HRGMv2_3894_11 HRGMv2_3894_11_61 74450 76315 - 3.A.1.120.6
Gene ID: HRGMv2_3894_11_52
Type: TC
Location: 62962 - 63681 (+)
Gene ID: HRGMv2_3894_11_53
Type: CAZyme
Location: 63764 - 64471 (+)
Gene ID: HRGMv2_3894_11_54
Type: TC
Location: 64489 - 65133 (-)
Gene ID: HRGMv2_3894_11_55
Type: TC
Location: 65178 - 66620 (-)
Gene ID: HRGMv2_3894_11_56
Type: peptidase
Location: 66887 - 68485 (+)
Gene ID: HRGMv2_3894_11_57
Type: TC
Location: 68514 - 70379 (+)
Gene ID: HRGMv2_3894_11_58
Type: peptidase
Location: 70549 - 72657 (+)
Gene ID: HRGMv2_3894_11_59
Type: pfam
Location: 72711 - 73310 (+)
Gene ID: HRGMv2_3894_11_60
Type: TC
Location: 73681 - 74361 (+)
Gene ID: HRGMv2_3894_11_61
Type: TC
Location: 74450 - 76315 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3894_11_59 vegetarian > vegan 1.31812 0.03789

🧭 Explore Read Mapping of CGC

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