dbCAN Logo

Cluster: HRGMv2_3894_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3894_4 HRGMv2_3894_4_46 53355 56033 + GH77
TC HRGMv2_3894_4 HRGMv2_3894_4_47 56126 57490 - 2.A.2.6.2
pfam HRGMv2_3894_4 HRGMv2_3894_4_48 57537 59141 - DUF6377
CAZyme HRGMv2_3894_4 HRGMv2_3894_4_49 59521 61350 + GH13_46
NULL(UNKNOWN) HRGMv2_3894_4 HRGMv2_3894_4_50 61297 61422 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3894_4 HRGMv2_3894_4_51 61528 63708 + GH97
TC HRGMv2_3894_4 HRGMv2_3894_4_52 63800 66892 + 1.B.14.6.1
TC HRGMv2_3894_4 HRGMv2_3894_4_53 66913 68532 + 8.A.46.1.1
pfam HRGMv2_3894_4 HRGMv2_3894_4_54 68554 69750 + SusE
pfam HRGMv2_3894_4 HRGMv2_3894_4_55 69775 70803 + SusF_SusE
CAZyme HRGMv2_3894_4 HRGMv2_3894_4_56 70952 73018 + GH13_36
Gene ID: HRGMv2_3894_4_46
Type: CAZyme
Location: 53355 - 56033 (+)
Gene ID: HRGMv2_3894_4_47
Type: TC
Location: 56126 - 57490 (-)
Gene ID: HRGMv2_3894_4_48
Type: pfam
Location: 57537 - 59141 (-)
Gene ID: HRGMv2_3894_4_49
Type: CAZyme
Location: 59521 - 61350 (+)
Gene ID: HRGMv2_3894_4_50
Type:
Location: 61297 - 61422 (-)
Gene ID: HRGMv2_3894_4_51
Type: CAZyme
Location: 61528 - 63708 (+)
Gene ID: HRGMv2_3894_4_52
Type: TC
Location: 63800 - 66892 (+)
Gene ID: HRGMv2_3894_4_53
Type: TC
Location: 66913 - 68532 (+)
Gene ID: HRGMv2_3894_4_54
Type: pfam
Location: 68554 - 69750 (+)
Gene ID: HRGMv2_3894_4_55
Type: pfam
Location: 69775 - 70803 (+)
Gene ID: HRGMv2_3894_4_56
Type: CAZyme
Location: 70952 - 73018 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List