Cluster: HRGMv2_3894_CGC10
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate: beta-glucan
- Genome ID: HRGMv2_3894
- CGC Family ID: CGCFAM_00101
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3894_3 | HRGMv2_3894_3_33 | 37188 | 39620 | + | 1.B.14.6.12 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_34 | 39635 | 41857 | - | GH3 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_35 | 41897 | 44380 | - | GH2 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_36 | 44414 | 47290 | - | GH31_4 |
| TF | HRGMv2_3894_3 | HRGMv2_3894_3_37 | 47447 | 51463 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_38 | 51698 | 53401 | - | GH5_4 |
| NULL(UNKNOWN) | HRGMv2_3894_3 | HRGMv2_3894_3_39 | 53478 | 55280 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3894_3 | HRGMv2_3894_3_40 | 55297 | 57030 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3894_3 | HRGMv2_3894_3_41 | 57055 | 60228 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_42 | 60549 | 62552 | - | GH2 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_43 | 62821 | 64383 | + | CBM91 | GH43_12 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_44 | 64386 | 67406 | + | GH95 |
| CAZyme | HRGMv2_3894_3 | HRGMv2_3894_3_45 | 67446 | 69794 | + | GH3 |
Gene ID: HRGMv2_3894_3_33
Type: TC
Location: 37188 - 39620 (+)
Type: TC
Location: 37188 - 39620 (+)
Gene ID: HRGMv2_3894_3_34
Type: CAZyme
Location: 39635 - 41857 (-)
Type: CAZyme
Location: 39635 - 41857 (-)
Gene ID: HRGMv2_3894_3_35
Type: CAZyme
Location: 41897 - 44380 (-)
Type: CAZyme
Location: 41897 - 44380 (-)
Gene ID: HRGMv2_3894_3_36
Type: CAZyme
Location: 44414 - 47290 (-)
Type: CAZyme
Location: 44414 - 47290 (-)
Gene ID: HRGMv2_3894_3_37
Type: TF
Location: 47447 - 51463 (-)
Type: TF
Location: 47447 - 51463 (-)
Gene ID: HRGMv2_3894_3_38
Type: CAZyme
Location: 51698 - 53401 (-)
Type: CAZyme
Location: 51698 - 53401 (-)
Gene ID: HRGMv2_3894_3_39
Type:
Location: 53478 - 55280 (-)
Type:
Location: 53478 - 55280 (-)
Gene ID: HRGMv2_3894_3_40
Type: pfam
Location: 55297 - 57030 (-)
Type: pfam
Location: 55297 - 57030 (-)
Gene ID: HRGMv2_3894_3_41
Type: TC
Location: 57055 - 60228 (-)
Type: TC
Location: 57055 - 60228 (-)
Gene ID: HRGMv2_3894_3_42
Type: CAZyme
Location: 60549 - 62552 (-)
Type: CAZyme
Location: 60549 - 62552 (-)
Gene ID: HRGMv2_3894_3_43
Type: CAZyme
Location: 62821 - 64383 (+)
Type: CAZyme
Location: 62821 - 64383 (+)
Gene ID: HRGMv2_3894_3_44
Type: CAZyme
Location: 64386 - 67406 (+)
Type: CAZyme
Location: 64386 - 67406 (+)
Gene ID: HRGMv2_3894_3_45
Type: CAZyme
Location: 67446 - 69794 (+)
Type: CAZyme
Location: 67446 - 69794 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola ilei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3894_3_38 | vegetarian > vegan | 1.39495 | 0.03789 |
| HRGMv2_3894_3_39 | vegetarian > vegan | 1.59204 | 0.03789 |
| HRGMv2_3894_3_40 | vegetarian > vegan | 1.63463 | 0.03789 |