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Cluster: HRGMv2_3894_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_25 HRGMv2_3894_25_7 7917 11324 - 1.B.14.6.1
CAZyme HRGMv2_3894_25 HRGMv2_3894_25_8 11511 12929 - GH140
CAZyme HRGMv2_3894_25 HRGMv2_3894_25_9 12939 14336 - GH28
CAZyme HRGMv2_3894_25 HRGMv2_3894_25_10 14365 15546 - GH105
pfam HRGMv2_3894_25 HRGMv2_3894_25_11 15580 16995 - Sde182_NH-like | Sde0182_C
CAZyme HRGMv2_3894_25 HRGMv2_3894_25_12 17059 18060 - GH43_18
CAZyme HRGMv2_3894_25 HRGMv2_3894_25_13 18091 19491 - PL1_2
Gene ID: HRGMv2_3894_25_7
Type: TC
Location: 7917 - 11324 (-)
Gene ID: HRGMv2_3894_25_8
Type: CAZyme
Location: 11511 - 12929 (-)
Gene ID: HRGMv2_3894_25_9
Type: CAZyme
Location: 12939 - 14336 (-)
Gene ID: HRGMv2_3894_25_10
Type: CAZyme
Location: 14365 - 15546 (-)
Gene ID: HRGMv2_3894_25_11
Type: pfam
Location: 15580 - 16995 (-)
Gene ID: HRGMv2_3894_25_12
Type: CAZyme
Location: 17059 - 18060 (-)
Gene ID: HRGMv2_3894_25_13
Type: CAZyme
Location: 18091 - 19491 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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