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Cluster: HRGMv2_3894_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_43 HRGMv2_3894_43_1 1 3177 + 1.B.14.6.1
TC HRGMv2_3894_43 HRGMv2_3894_43_2 3239 4747 + 8.A.46.1.4
STP HRGMv2_3894_43 HRGMv2_3894_43_3 4849 5499 + Nitroreductase
NULL(UNKNOWN) HRGMv2_3894_43 HRGMv2_3894_43_4 5565 5714 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3894_43 HRGMv2_3894_43_5 5767 8931 + 1.B.14.6.1
pfam HRGMv2_3894_43 HRGMv2_3894_43_6 8949 10763 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_3894_43 HRGMv2_3894_43_7 10832 11890 + GH43_17
CAZyme HRGMv2_3894_43 HRGMv2_3894_43_8 11940 13079 + CE1
Gene ID: HRGMv2_3894_43_1
Type: TC
Location: 1 - 3177 (+)
Gene ID: HRGMv2_3894_43_2
Type: TC
Location: 3239 - 4747 (+)
Gene ID: HRGMv2_3894_43_3
Type: STP
Location: 4849 - 5499 (+)
Gene ID: HRGMv2_3894_43_4
Type:
Location: 5565 - 5714 (-)
Gene ID: HRGMv2_3894_43_5
Type: TC
Location: 5767 - 8931 (+)
Gene ID: HRGMv2_3894_43_6
Type: pfam
Location: 8949 - 10763 (+)
Gene ID: HRGMv2_3894_43_7
Type: CAZyme
Location: 10832 - 11890 (+)
Gene ID: HRGMv2_3894_43_8
Type: CAZyme
Location: 11940 - 13079 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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