Cluster: HRGMv2_3894_CGC8
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate: arabinogalactan
- Genome ID: HRGMv2_3894
- CGC Family ID: CGCFAM_04187
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_140 | 173977 | 175590 | + | CBM91 | GH43_12 |
| sulfatase | HRGMv2_3894_2 | HRGMv2_3894_2_141 | 175604 | 177187 | + | S1_20 |
| TC | HRGMv2_3894_2 | HRGMv2_3894_2_142 | 177536 | 180559 | + | 1.B.14.6.1 |
| TC | HRGMv2_3894_2 | HRGMv2_3894_2_143 | 180571 | 182175 | + | 8.A.46.1.3 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_144 | 182277 | 183341 | + | GH43 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_145 | 183410 | 186334 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_3894_2 | HRGMv2_3894_2_146 | 186402 | 187283 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_3894_2 | HRGMv2_3894_2_147 | 187320 | 188420 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_148 | 188469 | 189473 | + | GH43 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_149 | 189497 | 190870 | + | GH49 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_150 | 190888 | 192945 | + | GH36 |
| sulfatase | HRGMv2_3894_2 | HRGMv2_3894_2_151 | 193045 | 194424 | - | S1_14 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_152 | 194540 | 196519 | - | GH43 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_153 | 196537 | 197973 | - | GH27 |
| sulfatase | HRGMv2_3894_2 | HRGMv2_3894_2_154 | 198067 | 199497 | - | S1_8 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_155 | 199515 | 201347 | - | GH2 |
| CAZyme | HRGMv2_3894_2 | HRGMv2_3894_2_156 | 201531 | 203012 | + | GH49 |
Gene ID: HRGMv2_3894_2_140
Type: CAZyme
Location: 173977 - 175590 (+)
Type: CAZyme
Location: 173977 - 175590 (+)
Gene ID: HRGMv2_3894_2_141
Type: sulfatase
Location: 175604 - 177187 (+)
Type: sulfatase
Location: 175604 - 177187 (+)
Gene ID: HRGMv2_3894_2_142
Type: TC
Location: 177536 - 180559 (+)
Type: TC
Location: 177536 - 180559 (+)
Gene ID: HRGMv2_3894_2_143
Type: TC
Location: 180571 - 182175 (+)
Type: TC
Location: 180571 - 182175 (+)
Gene ID: HRGMv2_3894_2_144
Type: CAZyme
Location: 182277 - 183341 (+)
Type: CAZyme
Location: 182277 - 183341 (+)
Gene ID: HRGMv2_3894_2_145
Type: CAZyme
Location: 183410 - 186334 (+)
Type: CAZyme
Location: 183410 - 186334 (+)
Gene ID: HRGMv2_3894_2_146
Type:
Location: 186402 - 187283 (+)
Type:
Location: 186402 - 187283 (+)
Gene ID: HRGMv2_3894_2_147
Type:
Location: 187320 - 188420 (+)
Type:
Location: 187320 - 188420 (+)
Gene ID: HRGMv2_3894_2_148
Type: CAZyme
Location: 188469 - 189473 (+)
Type: CAZyme
Location: 188469 - 189473 (+)
Gene ID: HRGMv2_3894_2_149
Type: CAZyme
Location: 189497 - 190870 (+)
Type: CAZyme
Location: 189497 - 190870 (+)
Gene ID: HRGMv2_3894_2_150
Type: CAZyme
Location: 190888 - 192945 (+)
Type: CAZyme
Location: 190888 - 192945 (+)
Gene ID: HRGMv2_3894_2_151
Type: sulfatase
Location: 193045 - 194424 (-)
Type: sulfatase
Location: 193045 - 194424 (-)
Gene ID: HRGMv2_3894_2_152
Type: CAZyme
Location: 194540 - 196519 (-)
Type: CAZyme
Location: 194540 - 196519 (-)
Gene ID: HRGMv2_3894_2_153
Type: CAZyme
Location: 196537 - 197973 (-)
Type: CAZyme
Location: 196537 - 197973 (-)
Gene ID: HRGMv2_3894_2_154
Type: sulfatase
Location: 198067 - 199497 (-)
Type: sulfatase
Location: 198067 - 199497 (-)
Gene ID: HRGMv2_3894_2_155
Type: CAZyme
Location: 199515 - 201347 (-)
Type: CAZyme
Location: 199515 - 201347 (-)
Gene ID: HRGMv2_3894_2_156
Type: CAZyme
Location: 201531 - 203012 (+)
Type: CAZyme
Location: 201531 - 203012 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola ilei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.