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Cluster: HRGMv2_3894_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_19 HRGMv2_3894_19_35 40069 41313 + 3.A.1.125.5
TF HRGMv2_3894_19 HRGMv2_3894_19_36 41558 42322 - 0038753
pfam HRGMv2_3894_19 HRGMv2_3894_19_37 42378 44570 + DUF5686
CAZyme HRGMv2_3894_19 HRGMv2_3894_19_38 44604 45758 - GT2
pfam HRGMv2_3894_19 HRGMv2_3894_19_39 45954 47114 - Orn_DAP_Arg_deC | Orn_Arg_deC_N
pfam HRGMv2_3894_19 HRGMv2_3894_19_40 47238 48557 - AA_kinase | ACT_9
TC HRGMv2_3894_19 HRGMv2_3894_19_41 48679 49359 - 3.A.1.140.1
Gene ID: HRGMv2_3894_19_35
Type: TC
Location: 40069 - 41313 (+)
Gene ID: HRGMv2_3894_19_36
Type: TF
Location: 41558 - 42322 (-)
Gene ID: HRGMv2_3894_19_37
Type: pfam
Location: 42378 - 44570 (+)
Gene ID: HRGMv2_3894_19_38
Type: CAZyme
Location: 44604 - 45758 (-)
Gene ID: HRGMv2_3894_19_39
Type: pfam
Location: 45954 - 47114 (-)
Gene ID: HRGMv2_3894_19_40
Type: pfam
Location: 47238 - 48557 (-)
Gene ID: HRGMv2_3894_19_41
Type: TC
Location: 48679 - 49359 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3894_19_41 vegetarian > vegan 1.32109 0.03789

🧭 Explore Read Mapping of CGC

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