Cluster: HRGMv2_3894_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3894
- CGC Family ID: CGCFAM_00755
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3894_1 | HRGMv2_3894_1_140 | 154604 | 156268 | - | 4.C.1.1.4 |
| pfam | HRGMv2_3894_1 | HRGMv2_3894_1_141 | 156418 | 156723 | + | DUF4286 |
| pfam | HRGMv2_3894_1 | HRGMv2_3894_1_142 | 156720 | 157289 | + | RuvC |
| CAZyme | HRGMv2_3894_1 | HRGMv2_3894_1_143 | 157297 | 159297 | + | GH13_14 |
| TC | HRGMv2_3894_1 | HRGMv2_3894_1_144 | 159349 | 160800 | + | 3.A.1.15.11 |
| TC | HRGMv2_3894_1 | HRGMv2_3894_1_145 | 160902 | 162077 | - | 2.A.23.2.7 |
Gene ID: HRGMv2_3894_1_140
Type: TC
Location: 154604 - 156268 (-)
Type: TC
Location: 154604 - 156268 (-)
Gene ID: HRGMv2_3894_1_141
Type: pfam
Location: 156418 - 156723 (+)
Type: pfam
Location: 156418 - 156723 (+)
Gene ID: HRGMv2_3894_1_142
Type: pfam
Location: 156720 - 157289 (+)
Type: pfam
Location: 156720 - 157289 (+)
Gene ID: HRGMv2_3894_1_143
Type: CAZyme
Location: 157297 - 159297 (+)
Type: CAZyme
Location: 157297 - 159297 (+)
Gene ID: HRGMv2_3894_1_144
Type: TC
Location: 159349 - 160800 (+)
Type: TC
Location: 159349 - 160800 (+)
Gene ID: HRGMv2_3894_1_145
Type: TC
Location: 160902 - 162077 (-)
Type: TC
Location: 160902 - 162077 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola ilei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3894_1_140 | vegetarian > vegan | 1.48321 | 0.03789 |