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Cluster: HRGMv2_3894_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3894_10 HRGMv2_3894_10_45 57951 58778 - GT23
CAZyme HRGMv2_3894_10 HRGMv2_3894_10_46 58856 59827 + GT2
CAZyme HRGMv2_3894_10 HRGMv2_3894_10_47 59840 60859 + GT94
pfam HRGMv2_3894_10 HRGMv2_3894_10_48 60864 61778 + Glycos_transf_2
CAZyme HRGMv2_3894_10 HRGMv2_3894_10_49 61775 62845 + GT4
CAZyme HRGMv2_3894_10 HRGMv2_3894_10_50 62879 64141 + GT4
CAZyme HRGMv2_3894_10 HRGMv2_3894_10_51 64134 64889 + GT2
pfam HRGMv2_3894_10 HRGMv2_3894_10_52 64934 66031 + Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_8 | DUF4369
TC HRGMv2_3894_10 HRGMv2_3894_10_53 66170 68662 - 9.B.144.1.4
Gene ID: HRGMv2_3894_10_45
Type: CAZyme
Location: 57951 - 58778 (-)
Gene ID: HRGMv2_3894_10_46
Type: CAZyme
Location: 58856 - 59827 (+)
Gene ID: HRGMv2_3894_10_47
Type: CAZyme
Location: 59840 - 60859 (+)
Gene ID: HRGMv2_3894_10_48
Type: pfam
Location: 60864 - 61778 (+)
Gene ID: HRGMv2_3894_10_49
Type: CAZyme
Location: 61775 - 62845 (+)
Gene ID: HRGMv2_3894_10_50
Type: CAZyme
Location: 62879 - 64141 (+)
Gene ID: HRGMv2_3894_10_51
Type: CAZyme
Location: 64134 - 64889 (+)
Gene ID: HRGMv2_3894_10_52
Type: pfam
Location: 64934 - 66031 (+)
Gene ID: HRGMv2_3894_10_53
Type: TC
Location: 66170 - 68662 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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