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Cluster: HRGMv2_3894_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3894_14 HRGMv2_3894_14_45 51356 53452 + 1.B.14.15.2
STP HRGMv2_3894_14 HRGMv2_3894_14_46 53464 54285 + SBP_bac_3
CAZyme HRGMv2_3894_14 HRGMv2_3894_14_47 54301 55290 + GH109
pfam HRGMv2_3894_14 HRGMv2_3894_14_48 55411 56481 + DUF4421
TC HRGMv2_3894_14 HRGMv2_3894_14_49 56618 58225 - 1.B.9.4.2
NULL(UNKNOWN) HRGMv2_3894_14 HRGMv2_3894_14_50 58252 59535 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3894_14 HRGMv2_3894_14_51 59699 60544 + PCMT | MTS | PrmA | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_3894_14 HRGMv2_3894_14_52 60628 61536 - GH25
Gene ID: HRGMv2_3894_14_45
Type: TC
Location: 51356 - 53452 (+)
Gene ID: HRGMv2_3894_14_46
Type: STP
Location: 53464 - 54285 (+)
Gene ID: HRGMv2_3894_14_47
Type: CAZyme
Location: 54301 - 55290 (+)
Gene ID: HRGMv2_3894_14_48
Type: pfam
Location: 55411 - 56481 (+)
Gene ID: HRGMv2_3894_14_49
Type: TC
Location: 56618 - 58225 (-)
Gene ID: HRGMv2_3894_14_50
Type:
Location: 58252 - 59535 (-)
Gene ID: HRGMv2_3894_14_51
Type: pfam
Location: 59699 - 60544 (+)
Gene ID: HRGMv2_3894_14_52
Type: CAZyme
Location: 60628 - 61536 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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