Genome Details
Selected Rep_genome_ID: HRGMv2_3651
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_3651 | 2,660,030 | 96.5% | 0.699% | Cameroon | Africa | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3651_CGC16 | CGCFAM_00088 | Yes | 9 | 1 | |
| HRGMv2_3651_CGC21 | CGCFAM_00415 | Yes | 3 | 1 | |
| HRGMv2_3651_CGC13 | CGCFAM_01065 | Yes | 3 | 1 | |
| HRGMv2_3651_CGC1 | CGCFAM_01145 | Yes | 4 | 1 | |
| HRGMv2_3651_CGC23 | CGCFAM_01618 | Yes | 7 | 3 | |
| HRGMv2_3651_CGC20 | CGCFAM_01728 | Yes | 6 | 1 | |
| HRGMv2_3651_CGC11 | CGCFAM_02309 | Yes | 8 | 4 | |
| HRGMv2_3651_CGC12 | CGCFAM_02524 | Yes | 3 | 1 | |
| HRGMv2_3651_CGC10 | CGCFAM_03199 | Yes | 6 | 1 | |
| HRGMv2_3651_CGC22 | CGCFAM_03915 | Yes | 4 | 1 | |
| HRGMv2_3651_CGC8 | CGCFAM_04095 | Yes | 10 | 1 | |
| HRGMv2_3651_CGC15 | CGCFAM_05799 | Yes | 8 | 3 | |
| HRGMv2_3651_CGC14 | CGCFAM_05908 | Yes | 5 | 2 | |
| HRGMv2_3651_CGC7 | CGCFAM_08769 | Yes | 3 | 1 | |
| HRGMv2_3651_CGC17 | CGCFAM_10412 | Yes | 5 | 1 | |
| HRGMv2_3651_CGC19 | CGCFAM_10413 | Yes | 12 | 2 | |
| HRGMv2_3651_CGC24 | CGCFAM_10414 | Yes | 5 | 1 | |
| HRGMv2_3651_CGC6 | CGCFAM_10415 | Yes | 4 | 1 |
Top CAZyme Families