Cluster: HRGMv2_3651_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_10413
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_66 | 81583 | 82557 | + | 3.A.1.15.3 |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_67 | 82595 | 83317 | + | 3.A.1.15.4 |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_68 | 83327 | 84160 | + | 3.A.1.15.10 |
| NULL(UNKNOWN) | HRGMv2_3651_10 | HRGMv2_3651_10_69 | 84162 | 84602 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3651_10 | HRGMv2_3651_10_70 | 84625 | 85041 | - | Vsr |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_71 | 85235 | 86230 | + | 3.A.1.34.1 |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_72 | 86234 | 87166 | + | 3.A.1.34.1 |
| TC | HRGMv2_3651_10 | HRGMv2_3651_10_73 | 87163 | 87960 | + | 3.A.1.34.1 |
| pfam | HRGMv2_3651_10 | HRGMv2_3651_10_74 | 88029 | 88862 | + | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | HRGMv2_3651_10 | HRGMv2_3651_10_75 | 89346 | 91670 | + | CBM48 |
| NULL(UNKNOWN) | HRGMv2_3651_10 | HRGMv2_3651_10_76 | 91771 | 92625 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3651_10 | HRGMv2_3651_10_77 | 92787 | 95381 | + | GH13_14 |
Gene ID: HRGMv2_3651_10_66
Type: TC
Location: 81583 - 82557 (+)
Type: TC
Location: 81583 - 82557 (+)
Gene ID: HRGMv2_3651_10_67
Type: TC
Location: 82595 - 83317 (+)
Type: TC
Location: 82595 - 83317 (+)
Gene ID: HRGMv2_3651_10_68
Type: TC
Location: 83327 - 84160 (+)
Type: TC
Location: 83327 - 84160 (+)
Gene ID: HRGMv2_3651_10_69
Type:
Location: 84162 - 84602 (+)
Type:
Location: 84162 - 84602 (+)
Gene ID: HRGMv2_3651_10_70
Type: pfam
Location: 84625 - 85041 (-)
Type: pfam
Location: 84625 - 85041 (-)
Gene ID: HRGMv2_3651_10_71
Type: TC
Location: 85235 - 86230 (+)
Type: TC
Location: 85235 - 86230 (+)
Gene ID: HRGMv2_3651_10_72
Type: TC
Location: 86234 - 87166 (+)
Type: TC
Location: 86234 - 87166 (+)
Gene ID: HRGMv2_3651_10_73
Type: TC
Location: 87163 - 87960 (+)
Type: TC
Location: 87163 - 87960 (+)
Gene ID: HRGMv2_3651_10_74
Type: pfam
Location: 88029 - 88862 (+)
Type: pfam
Location: 88029 - 88862 (+)
Gene ID: HRGMv2_3651_10_75
Type: CAZyme
Location: 89346 - 91670 (+)
Type: CAZyme
Location: 89346 - 91670 (+)
Gene ID: HRGMv2_3651_10_76
Type:
Location: 91771 - 92625 (+)
Type:
Location: 91771 - 92625 (+)
Gene ID: HRGMv2_3651_10_77
Type: CAZyme
Location: 92787 - 95381 (+)
Type: CAZyme
Location: 92787 - 95381 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.