Cluster: HRGMv2_3651_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_10414
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_20 | HRGMv2_3651_20_22 | 29574 | 30539 | + | GH23 |
| TC | HRGMv2_3651_20 | HRGMv2_3651_20_23 | 30569 | 31927 | + | 9.B.186.1.1 |
| TC | HRGMv2_3651_20 | HRGMv2_3651_20_24 | 31963 | 32553 | - | 2.A.115.2.14 |
| NULL(UNKNOWN) | HRGMv2_3651_20 | HRGMv2_3651_20_25 | 32882 | 34504 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3651_20 | HRGMv2_3651_20_26 | 34628 | 36124 | + | 3.B.1.1.2 |
Gene ID: HRGMv2_3651_20_22
Type: CAZyme
Location: 29574 - 30539 (+)
Type: CAZyme
Location: 29574 - 30539 (+)
Gene ID: HRGMv2_3651_20_23
Type: TC
Location: 30569 - 31927 (+)
Type: TC
Location: 30569 - 31927 (+)
Gene ID: HRGMv2_3651_20_24
Type: TC
Location: 31963 - 32553 (-)
Type: TC
Location: 31963 - 32553 (-)
Gene ID: HRGMv2_3651_20_25
Type:
Location: 32882 - 34504 (+)
Type:
Location: 32882 - 34504 (+)
Gene ID: HRGMv2_3651_20_26
Type: TC
Location: 34628 - 36124 (+)
Type: TC
Location: 34628 - 36124 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.