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Cluster: HRGMv2_3651_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3651_2 HRGMv2_3651_2_89 99161 100666 + 9.B.174.1.1
pfam HRGMv2_3651_2 HRGMv2_3651_2_90 100667 101500 + Methyltrans_RNA
CAZyme HRGMv2_3651_2 HRGMv2_3651_2_91 101528 102265 + GT26
TC HRGMv2_3651_2 HRGMv2_3651_2_92 102315 103478 + 3.A.23.1.1
pfam HRGMv2_3651_2 HRGMv2_3651_2_93 103461 104192 - SpoU_methylase
STP HRGMv2_3651_2 HRGMv2_3651_2_94 104349 104903 + STAS
TC HRGMv2_3651_2 HRGMv2_3651_2_95 105199 107298 + 3.A.1.30.1
STP HRGMv2_3651_2 HRGMv2_3651_2_96 107295 107846 + NUDIX
NULL(UNKNOWN) HRGMv2_3651_2 HRGMv2_3651_2_97 107843 108364 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3651_2 HRGMv2_3651_2_98 108577 110421 - 2.A.16.2.2
Gene ID: HRGMv2_3651_2_89
Type: TC
Location: 99161 - 100666 (+)
Gene ID: HRGMv2_3651_2_90
Type: pfam
Location: 100667 - 101500 (+)
Gene ID: HRGMv2_3651_2_91
Type: CAZyme
Location: 101528 - 102265 (+)
Gene ID: HRGMv2_3651_2_92
Type: TC
Location: 102315 - 103478 (+)
Gene ID: HRGMv2_3651_2_93
Type: pfam
Location: 103461 - 104192 (-)
Gene ID: HRGMv2_3651_2_94
Type: STP
Location: 104349 - 104903 (+)
Gene ID: HRGMv2_3651_2_95
Type: TC
Location: 105199 - 107298 (+)
Gene ID: HRGMv2_3651_2_96
Type: STP
Location: 107295 - 107846 (+)
Gene ID: HRGMv2_3651_2_97
Type:
Location: 107843 - 108364 (+)
Gene ID: HRGMv2_3651_2_98
Type: TC
Location: 108577 - 110421 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Spirochaetota
→
Class
Spirochaetia
→
Order
Treponematales
→
Family
Treponemataceae
→
Genus
Treponema_D
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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