Cluster: HRGMv2_3651_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_03199
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_2 | HRGMv2_3651_2_125 | 144148 | 144594 | + | 4.A.2.1.4 |
| NULL(UNKNOWN) | HRGMv2_3651_2 | HRGMv2_3651_2_126 | 144684 | 145244 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3651_2 | HRGMv2_3651_2_127 | 145394 | 146182 | + | GH23 |
| TF | HRGMv2_3651_2 | HRGMv2_3651_2_128 | 146280 | 146897 | + | 0045030 |
| NULL(UNKNOWN) | HRGMv2_3651_2 | HRGMv2_3651_2_129 | 147012 | 148217 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3651_2 | HRGMv2_3651_2_130 | 148454 | 149509 | + | 9.B.146.1.4 |
Gene ID: HRGMv2_3651_2_125
Type: TC
Location: 144148 - 144594 (+)
Type: TC
Location: 144148 - 144594 (+)
Gene ID: HRGMv2_3651_2_126
Type:
Location: 144684 - 145244 (+)
Type:
Location: 144684 - 145244 (+)
Gene ID: HRGMv2_3651_2_127
Type: CAZyme
Location: 145394 - 146182 (+)
Type: CAZyme
Location: 145394 - 146182 (+)
Gene ID: HRGMv2_3651_2_128
Type: TF
Location: 146280 - 146897 (+)
Type: TF
Location: 146280 - 146897 (+)
Gene ID: HRGMv2_3651_2_129
Type:
Location: 147012 - 148217 (-)
Type:
Location: 147012 - 148217 (-)
Gene ID: HRGMv2_3651_2_130
Type: TC
Location: 148454 - 149509 (+)
Type: TC
Location: 148454 - 149509 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.