Cluster: HRGMv2_3651_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_10412
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_9 | HRGMv2_3651_9_8 | 4668 | 7046 | - | CBM48 |
| pfam | HRGMv2_3651_9 | HRGMv2_3651_9_9 | 7447 | 8304 | - | PDDEXK_2 |
| pfam | HRGMv2_3651_9 | HRGMv2_3651_9_10 | 8625 | 9458 | - | PDDEXK_2 |
| TC | HRGMv2_3651_9 | HRGMv2_3651_9_11 | 9865 | 11253 | - | 2.A.66.1.32 |
| TC | HRGMv2_3651_9 | HRGMv2_3651_9_12 | 11359 | 12603 | + | 8.A.59.4.2 |
Gene ID: HRGMv2_3651_9_8
Type: CAZyme
Location: 4668 - 7046 (-)
Type: CAZyme
Location: 4668 - 7046 (-)
Gene ID: HRGMv2_3651_9_9
Type: pfam
Location: 7447 - 8304 (-)
Type: pfam
Location: 7447 - 8304 (-)
Gene ID: HRGMv2_3651_9_10
Type: pfam
Location: 8625 - 9458 (-)
Type: pfam
Location: 8625 - 9458 (-)
Gene ID: HRGMv2_3651_9_11
Type: TC
Location: 9865 - 11253 (-)
Type: TC
Location: 9865 - 11253 (-)
Gene ID: HRGMv2_3651_9_12
Type: TC
Location: 11359 - 12603 (+)
Type: TC
Location: 11359 - 12603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.