Cluster: HRGMv2_3651_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_01618
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_20 | HRGMv2_3651_20_12 | 13917 | 15035 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_3651_20 | HRGMv2_3651_20_13 | 15075 | 16871 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3651_20 | HRGMv2_3651_20_14 | 17022 | 18761 | - | GH13_36 |
| TC | HRGMv2_3651_20 | HRGMv2_3651_20_15 | 18905 | 19978 | - | 3.A.1.1.6 |
| TC | HRGMv2_3651_20 | HRGMv2_3651_20_16 | 19975 | 21927 | - | 3.A.1.1.6 |
| TC | HRGMv2_3651_20 | HRGMv2_3651_20_17 | 22018 | 23196 | - | 3.A.1.1.6 |
| CAZyme | HRGMv2_3651_20 | HRGMv2_3651_20_18 | 23241 | 26063 | - | GH13_14 |
Gene ID: HRGMv2_3651_20_12
Type: CAZyme
Location: 13917 - 15035 (-)
Type: CAZyme
Location: 13917 - 15035 (-)
Gene ID: HRGMv2_3651_20_13
Type:
Location: 15075 - 16871 (-)
Type:
Location: 15075 - 16871 (-)
Gene ID: HRGMv2_3651_20_14
Type: CAZyme
Location: 17022 - 18761 (-)
Type: CAZyme
Location: 17022 - 18761 (-)
Gene ID: HRGMv2_3651_20_15
Type: TC
Location: 18905 - 19978 (-)
Type: TC
Location: 18905 - 19978 (-)
Gene ID: HRGMv2_3651_20_16
Type: TC
Location: 19975 - 21927 (-)
Type: TC
Location: 19975 - 21927 (-)
Gene ID: HRGMv2_3651_20_17
Type: TC
Location: 22018 - 23196 (-)
Type: TC
Location: 22018 - 23196 (-)
Gene ID: HRGMv2_3651_20_18
Type: CAZyme
Location: 23241 - 26063 (-)
Type: CAZyme
Location: 23241 - 26063 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.