Cluster: HRGMv2_3651_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_03915
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_18 | HRGMv2_3651_18_3 | 2442 | 3713 | - | 9.B.160.1.10 |
| pfam | HRGMv2_3651_18 | HRGMv2_3651_18_4 | 4012 | 5637 | - | PEGA |
| pfam | HRGMv2_3651_18 | HRGMv2_3651_18_5 | 5715 | 6371 | - | RadC |
| CAZyme | HRGMv2_3651_18 | HRGMv2_3651_18_6 | 6438 | 7031 | + | GH73 |
Gene ID: HRGMv2_3651_18_3
Type: TC
Location: 2442 - 3713 (-)
Type: TC
Location: 2442 - 3713 (-)
Gene ID: HRGMv2_3651_18_4
Type: pfam
Location: 4012 - 5637 (-)
Type: pfam
Location: 4012 - 5637 (-)
Gene ID: HRGMv2_3651_18_5
Type: pfam
Location: 5715 - 6371 (-)
Type: pfam
Location: 5715 - 6371 (-)
Gene ID: HRGMv2_3651_18_6
Type: CAZyme
Location: 6438 - 7031 (+)
Type: CAZyme
Location: 6438 - 7031 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.