Cluster: HRGMv2_3651_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_00415
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_13 | HRGMv2_3651_13_44 | 52261 | 53181 | + | 3.A.1.1.36 |
| TC | HRGMv2_3651_13 | HRGMv2_3651_13_45 | 53369 | 54214 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_3651_13 | HRGMv2_3651_13_46 | 54219 | 55712 | + | GH32 |
Gene ID: HRGMv2_3651_13_44
Type: TC
Location: 52261 - 53181 (+)
Type: TC
Location: 52261 - 53181 (+)
Gene ID: HRGMv2_3651_13_45
Type: TC
Location: 53369 - 54214 (+)
Type: TC
Location: 53369 - 54214 (+)
Gene ID: HRGMv2_3651_13_46
Type: CAZyme
Location: 54219 - 55712 (+)
Type: CAZyme
Location: 54219 - 55712 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.