Cluster: HRGMv2_3651_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_01145
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_1 | HRGMv2_3651_1_62 | 70415 | 71581 | + | GT28 |
| pfam | HRGMv2_3651_1 | HRGMv2_3651_1_63 | 71578 | 72060 | + | Colicin_V |
| pfam | HRGMv2_3651_1 | HRGMv2_3651_1_64 | 72061 | 73278 | + | DNA_pol3_delta2 |
| TC | HRGMv2_3651_1 | HRGMv2_3651_1_65 | 73275 | 74495 | + | 2.A.21.9.1 |
Gene ID: HRGMv2_3651_1_62
Type: CAZyme
Location: 70415 - 71581 (+)
Type: CAZyme
Location: 70415 - 71581 (+)
Gene ID: HRGMv2_3651_1_63
Type: pfam
Location: 71578 - 72060 (+)
Type: pfam
Location: 71578 - 72060 (+)
Gene ID: HRGMv2_3651_1_64
Type: pfam
Location: 72061 - 73278 (+)
Type: pfam
Location: 72061 - 73278 (+)
Gene ID: HRGMv2_3651_1_65
Type: TC
Location: 73275 - 74495 (+)
Type: TC
Location: 73275 - 74495 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.