Cluster: HRGMv2_3651_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_10415
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3651_1 | HRGMv2_3651_1_408 | 443018 | 444061 | - | GT8 |
| pfam | HRGMv2_3651_1 | HRGMv2_3651_1_409 | 444482 | 445516 | - | Gp_dh_N | Gp_dh_C |
| STP | HRGMv2_3651_1 | HRGMv2_3651_1_410 | 445628 | 448744 | - | GGDEF |
| TC | HRGMv2_3651_1 | HRGMv2_3651_1_411 | 449030 | 451636 | - | 3.A.9.1.2 |
Gene ID: HRGMv2_3651_1_408
Type: CAZyme
Location: 443018 - 444061 (-)
Type: CAZyme
Location: 443018 - 444061 (-)
Gene ID: HRGMv2_3651_1_409
Type: pfam
Location: 444482 - 445516 (-)
Type: pfam
Location: 444482 - 445516 (-)
Gene ID: HRGMv2_3651_1_410
Type: STP
Location: 445628 - 448744 (-)
Type: STP
Location: 445628 - 448744 (-)
Gene ID: HRGMv2_3651_1_411
Type: TC
Location: 449030 - 451636 (-)
Type: TC
Location: 449030 - 451636 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.