Cluster: HRGMv2_3651_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_01728
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_12 | HRGMv2_3651_12_30 | 40126 | 41667 | - | 2.A.35.2.1 |
| NULL(UNKNOWN) | HRGMv2_3651_12 | HRGMv2_3651_12_31 | 41667 | 41861 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3651_12 | HRGMv2_3651_12_32 | 41902 | 43242 | - | MatE | MatE |
| CAZyme | HRGMv2_3651_12 | HRGMv2_3651_12_33 | 43447 | 45150 | + | GT4 |
| NULL(UNKNOWN) | HRGMv2_3651_12 | HRGMv2_3651_12_34 | 45134 | 45493 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3651_12 | HRGMv2_3651_12_35 | 45504 | 47651 | + | 3.A.1.112.9 |
Gene ID: HRGMv2_3651_12_30
Type: TC
Location: 40126 - 41667 (-)
Type: TC
Location: 40126 - 41667 (-)
Gene ID: HRGMv2_3651_12_31
Type:
Location: 41667 - 41861 (-)
Type:
Location: 41667 - 41861 (-)
Gene ID: HRGMv2_3651_12_32
Type: pfam
Location: 41902 - 43242 (-)
Type: pfam
Location: 41902 - 43242 (-)
Gene ID: HRGMv2_3651_12_33
Type: CAZyme
Location: 43447 - 45150 (+)
Type: CAZyme
Location: 43447 - 45150 (+)
Gene ID: HRGMv2_3651_12_34
Type:
Location: 45134 - 45493 (+)
Type:
Location: 45134 - 45493 (+)
Gene ID: HRGMv2_3651_12_35
Type: TC
Location: 45504 - 47651 (+)
Type: TC
Location: 45504 - 47651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.