Cluster: HRGMv2_3651_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3651
- CGC Family ID: CGCFAM_05908
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3651_4 | HRGMv2_3651_4_45 | 42945 | 44405 | - | 2.A.25.1.4 |
| TC | HRGMv2_3651_4 | HRGMv2_3651_4_46 | 44984 | 47020 | + | 4.C.1.1.14 |
| pfam | HRGMv2_3651_4 | HRGMv2_3651_4_47 | 47124 | 48044 | - | EamA | EamA |
| CAZyme | HRGMv2_3651_4 | HRGMv2_3651_4_48 | 48127 | 50625 | - | GT35 |
| CAZyme | HRGMv2_3651_4 | HRGMv2_3651_4_49 | 50713 | 52833 | - | GH13_11 |
Gene ID: HRGMv2_3651_4_45
Type: TC
Location: 42945 - 44405 (-)
Type: TC
Location: 42945 - 44405 (-)
Gene ID: HRGMv2_3651_4_46
Type: TC
Location: 44984 - 47020 (+)
Type: TC
Location: 44984 - 47020 (+)
Gene ID: HRGMv2_3651_4_47
Type: pfam
Location: 47124 - 48044 (-)
Type: pfam
Location: 47124 - 48044 (-)
Gene ID: HRGMv2_3651_4_48
Type: CAZyme
Location: 48127 - 50625 (-)
Type: CAZyme
Location: 48127 - 50625 (-)
Gene ID: HRGMv2_3651_4_49
Type: CAZyme
Location: 50713 - 52833 (-)
Type: CAZyme
Location: 50713 - 52833 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.