Genome Details
Selected Rep_genome_ID: HRGMv2_2322
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter sp900752395
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_2322 | 2,194,609 | 99.09% | 0% | UK | Europe | HRGM |
| Rep_2035 | 2,095,190 | 95.9512% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2322_CGC16 | CGCFAM_00005 | Yes | 6 | 4 | |
| HRGMv2_2322_CGC17 | CGCFAM_00073 | Yes | 4 | 2 | |
| HRGMv2_2322_CGC19 | CGCFAM_00130 | Yes | 4 | 1 | |
| HRGMv2_2322_CGC24 | CGCFAM_00156 | Yes | 4 | 1 | |
| HRGMv2_2322_CGC10 | CGCFAM_00242 | Yes | 11 | 1 | |
| HRGMv2_2322_CGC3 | CGCFAM_00299 | Yes | 6 | 1 | beta-glucan |
| HRGMv2_2322_CGC5 | CGCFAM_00453 | Yes | 7 | 1 | |
| HRGMv2_2322_CGC21 | CGCFAM_00580 | Yes | 3 | 2 | alpha-glucan |
| HRGMv2_2322_CGC11 | CGCFAM_00682 | Yes | 7 | 1 | |
| HRGMv2_2322_CGC9 | CGCFAM_02348 | Yes | 5 | 1 | |
| HRGMv2_2322_CGC8 | CGCFAM_02355 | Yes | 4 | 1 | |
| HRGMv2_2322_CGC2 | CGCFAM_03221 | Yes | 5 | 1 | |
| HRGMv2_2322_CGC1 | CGCFAM_03768 | Yes | 4 | 1 | |
| HRGMv2_2322_CGC6 | CGCFAM_04042 | Yes | 7 | 1 | |
| HRGMv2_2322_CGC4 | CGCFAM_04374 | Yes | 3 | 1 | |
| HRGMv2_2322_CGC23 | CGCFAM_07514 | Yes | 5 | 1 | |
| HRGMv2_2322_CGC13 | CGCFAM_10039 | Yes | 5 | 2 | |
| HRGMv2_2322_CGC20 | CGCFAM_10040 | Yes | 8 | 1 | |
| HRGMv2_2322_CGC22 | CGCFAM_10041 | Yes | 5 | 1 | |
| HRGMv2_2322_CGC25 | CGCFAM_10042 | Yes | 4 | 1 |
Top CAZyme Families