Cluster: HRGMv2_2322_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2322
- CGC Family ID: CGCFAM_00005
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2322_15 | HRGMv2_2322_15_25 | 27977 | 29263 | - | GT4 |
| CAZyme | HRGMv2_2322_15 | HRGMv2_2322_15_26 | 29253 | 30503 | - | GT4 |
| CAZyme | HRGMv2_2322_15 | HRGMv2_2322_15_27 | 30478 | 31221 | - | GT26 |
| TC | HRGMv2_2322_15 | HRGMv2_2322_15_28 | 31221 | 32567 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2322_15 | HRGMv2_2322_15_29 | 32750 | 33145 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_2322_15 | HRGMv2_2322_15_30 | 33138 | 34079 | - | GT2 |
Gene ID: HRGMv2_2322_15_25
Type: CAZyme
Location: 27977 - 29263 (-)
Type: CAZyme
Location: 27977 - 29263 (-)
Gene ID: HRGMv2_2322_15_26
Type: CAZyme
Location: 29253 - 30503 (-)
Type: CAZyme
Location: 29253 - 30503 (-)
Gene ID: HRGMv2_2322_15_27
Type: CAZyme
Location: 30478 - 31221 (-)
Type: CAZyme
Location: 30478 - 31221 (-)
Gene ID: HRGMv2_2322_15_28
Type: TC
Location: 31221 - 32567 (-)
Type: TC
Location: 31221 - 32567 (-)
Gene ID: HRGMv2_2322_15_29
Type: pfam
Location: 32750 - 33145 (-)
Type: pfam
Location: 32750 - 33145 (-)
Gene ID: HRGMv2_2322_15_30
Type: CAZyme
Location: 33138 - 34079 (-)
Type: CAZyme
Location: 33138 - 34079 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter sp900752395
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.