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Cluster: HRGMv2_2322_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2322_10 HRGMv2_2322_10_23 21574 22911 - 2.A.36.2.1
CAZyme HRGMv2_2322_10 HRGMv2_2322_10_24 23242 25398 - GH112
pfam HRGMv2_2322_10 HRGMv2_2322_10_25 25456 25635 - DUF6903
TC HRGMv2_2322_10 HRGMv2_2322_10_26 25648 26541 - 3.A.1.1.18
TC HRGMv2_2322_10 HRGMv2_2322_10_27 26557 27447 - 3.A.1.1.20
STP HRGMv2_2322_10 HRGMv2_2322_10_28 27562 28902 - SBP_bac_1
TF HRGMv2_2322_10 HRGMv2_2322_10_29 29237 30076 + HTH_AraC | HTH_AraC
TC HRGMv2_2322_10 HRGMv2_2322_10_30 30154 31506 - 2.A.66.1.45
TC HRGMv2_2322_10 HRGMv2_2322_10_31 31513 32232 - 3.A.1.12.3
TC HRGMv2_2322_10 HRGMv2_2322_10_32 32296 33231 - 3.A.1.12.8
TC HRGMv2_2322_10 HRGMv2_2322_10_33 33315 33971 - 3.A.1.12.8
Gene ID: HRGMv2_2322_10_23
Type: TC
Location: 21574 - 22911 (-)
Gene ID: HRGMv2_2322_10_24
Type: CAZyme
Location: 23242 - 25398 (-)
Gene ID: HRGMv2_2322_10_25
Type: pfam
Location: 25456 - 25635 (-)
Gene ID: HRGMv2_2322_10_26
Type: TC
Location: 25648 - 26541 (-)
Gene ID: HRGMv2_2322_10_27
Type: TC
Location: 26557 - 27447 (-)
Gene ID: HRGMv2_2322_10_28
Type: STP
Location: 27562 - 28902 (-)
Gene ID: HRGMv2_2322_10_29
Type: TF
Location: 29237 - 30076 (+)
Gene ID: HRGMv2_2322_10_30
Type: TC
Location: 30154 - 31506 (-)
Gene ID: HRGMv2_2322_10_31
Type: TC
Location: 31513 - 32232 (-)
Gene ID: HRGMv2_2322_10_32
Type: TC
Location: 32296 - 33231 (-)
Gene ID: HRGMv2_2322_10_33
Type: TC
Location: 33315 - 33971 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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