Cluster: HRGMv2_2322_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: beta-glucan
- Genome ID: HRGMv2_2322
- CGC Family ID: CGCFAM_00299
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2322_4 | HRGMv2_2322_4_78 | 80766 | 82664 | + | 4.A.1.2.2 |
| CAZyme | HRGMv2_2322_4 | HRGMv2_2322_4_79 | 82699 | 84132 | + | GH1 |
| TC | HRGMv2_2322_4 | HRGMv2_2322_4_80 | 85009 | 85932 | + | 3.A.1.7.5 |
| TC | HRGMv2_2322_4 | HRGMv2_2322_4_81 | 85990 | 86883 | + | 3.A.1.7.5 |
| TC | HRGMv2_2322_4 | HRGMv2_2322_4_82 | 86876 | 87736 | + | 3.A.1.7.5 |
| TC | HRGMv2_2322_4 | HRGMv2_2322_4_83 | 87761 | 88510 | + | 3.A.1.7.1 |
Gene ID: HRGMv2_2322_4_78
Type: TC
Location: 80766 - 82664 (+)
Type: TC
Location: 80766 - 82664 (+)
Gene ID: HRGMv2_2322_4_79
Type: CAZyme
Location: 82699 - 84132 (+)
Type: CAZyme
Location: 82699 - 84132 (+)
Gene ID: HRGMv2_2322_4_80
Type: TC
Location: 85009 - 85932 (+)
Type: TC
Location: 85009 - 85932 (+)
Gene ID: HRGMv2_2322_4_81
Type: TC
Location: 85990 - 86883 (+)
Type: TC
Location: 85990 - 86883 (+)
Gene ID: HRGMv2_2322_4_82
Type: TC
Location: 86876 - 87736 (+)
Type: TC
Location: 86876 - 87736 (+)
Gene ID: HRGMv2_2322_4_83
Type: TC
Location: 87761 - 88510 (+)
Type: TC
Location: 87761 - 88510 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter sp900752395
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.