y
Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g011442m |
Family | AA3 |
Protein Properties | Length: 486 Molecular Weight: 53049.6 Isoelectric Point: 9.3575 |
Chromosome | Chromosome/Scaffold: 00032 Start: 769884 End: 773601 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 17 | 481 | 0 |
STDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFG RRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNA HIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL EKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVI TIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK |
Full Sequence |
---|
Protein Sequence Length: 486 Download |
MTLADTSPQS ASQYFISTDG VLNARARVLG GGSSINAGFY TRASSQFIER MGWDAKLVNE 60 SFPWVERQIV HQPKQEGWQK ALRDSLLDVG VSPFNGFTYD HIYGTKIGGT IFDRFGRRHT 120 AAELLASANP QKITVLIRAT VQKIVFDTSG KRPKAVGVIF KDENGNQHQA FLAGNPKSEV 180 ILSCGAIGTP QMLKLSGVGP KAELEKLNIS VVLDNAHIGK GMADNPMNAV FVPSNRPVEQ 240 SLIETVGITK LGVYIEASSG FGESRDSIHC HHGIMSAEIG QLSTIPPKQR TPEAIQDYIR 300 NKRTLPHEAF KGGFILEKIA SPISTGELSL INTNVDDNPS VSFNYFSHPL DLKRCVDGVR 360 MAAKIVQSKH FLNYTQCDQK SVEAILNASV RANVNLVPKH TNDTKSLEQF CKDTVITIWH 420 YHGGCHVGKV VSTEYKVLGI DRLRVVDGST YDESPGTNPQ GTVLMMGRYM GVKILRQRLG 480 KAAGV* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 4.0e-17 | 110 | 214 | 107 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 2.0e-23 | 24 | 467 | 481 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
pfam05199 | GMC_oxred_C | 1.0e-23 | 322 | 467 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 1.0e-31 | 24 | 476 | 492 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 1 | 485 | 485 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35951.1 | 0 | 1 | 485 | 109 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275841.1 | 0 | 1 | 485 | 100 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 1 | 485 | 64 | 547 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 1 | 485 | 107 | 591 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 1 | 484 | 113 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 15 | 478 | 89 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 15 | 478 | 89 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 15 | 478 | 89 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 15 | 478 | 89 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3red_L | 0 | 9 | 478 | 83 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO796743 | 486 | 1 | 486 | 0 |
ES808127 | 408 | 50 | 455 | 0 |
HO852522 | 376 | 106 | 481 | 0 |
EY850677 | 299 | 27 | 323 | 0 |
ES795368 | 336 | 71 | 405 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|