y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb04g031910.1 |
Family | AA3 |
Protein Properties | Length: 585 Molecular Weight: 62785.4 Isoelectric Point: 8.5186 |
Chromosome | Chromosome/Scaffold: 4 Start: 61812468 End: 61814941 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 46 | 578 | 0 |
MADYDYIIIGGGTAGCPLAATLSDRARVLLLERGGSPYEDARVLSMAHFSDVLADTSASSPSQRFVSEDGVINSRPRVLGGGSCINAGFFTRAGAGYVRA AGWDPREVRAAYRWVEDVVAFRPALGPWQTAVRRGLLETGVLPDNGFTYDHIPGTKVGGSIFDADGTRHTAADLLQYANQDGIDLYLRARVSRILFRYKG TKPVAEGVVYHDSRGNAHTAYLSPGAASEVILSAGALGSPQQLMLSGIGPADHLRSLGIDVVLDLPGVGQGMSDNPMNAIYVPSPSPVEVSLIQVVGITQ FGSYIEGASGANWNSHPSGTQTQPPRNLGMFSPQTGQLATVPPKQRTPEAIARAVEAMSQVPDAALRGGFILEKVLGPQSTGHLVLRNLNPDDNPSVRFN YFAHPDDLRRCVAGISAIERVIRSRAFSRFTYPNFAFPAALNVTAEFPVNTLYRRGGGDPRALEQFCRDTVMTIWHYHGGCQVGRVVDRNYKVLGVEALR VIDGSTFNASPGTNPQATVMMLGRYMGVKLLKE |
Full Sequence |
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Protein Sequence Length: 585 Download |
MASALSSAQA MAVLTVASFF ALLCISQQAR AANYTFMKDA VYAPRMADYD YIIIGGGTAG 60 CPLAATLSDR ARVLLLERGG SPYEDARVLS MAHFSDVLAD TSASSPSQRF VSEDGVINSR 120 PRVLGGGSCI NAGFFTRAGA GYVRAAGWDP REVRAAYRWV EDVVAFRPAL GPWQTAVRRG 180 LLETGVLPDN GFTYDHIPGT KVGGSIFDAD GTRHTAADLL QYANQDGIDL YLRARVSRIL 240 FRYKGTKPVA EGVVYHDSRG NAHTAYLSPG AASEVILSAG ALGSPQQLML SGIGPADHLR 300 SLGIDVVLDL PGVGQGMSDN PMNAIYVPSP SPVEVSLIQV VGITQFGSYI EGASGANWNS 360 HPSGTQTQPP RNLGMFSPQT GQLATVPPKQ RTPEAIARAV EAMSQVPDAA LRGGFILEKV 420 LGPQSTGHLV LRNLNPDDNP SVRFNYFAHP DDLRRCVAGI SAIERVIRSR AFSRFTYPNF 480 AFPAALNVTA EFPVNTLYRR GGGDPRALEQ FCRDTVMTIW HYHGGCQVGR VVDRNYKVLG 540 VEALRVIDGS TFNASPGTNP QATVMMLGRY MGVKLLKERM LLEP* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 2.0e-13 | 423 | 568 | 150 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 1.0e-32 | 46 | 319 | 329 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 2.0e-36 | 50 | 568 | 559 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 2.0e-49 | 42 | 581 | 588 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 19 | 580 | 581 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN31684.1 | 0 | 13 | 583 | 4 | 575 | unknown [Zea mays] |
DDBJ | BAD29242.1 | 0 | 11 | 575 | 1 | 569 | putative mandelonitrile lyase [Oryza sativa Japonica Group] |
GenBank | EAY87068.1 | 0 | 11 | 583 | 1 | 577 | hypothetical protein OsI_08464 [Oryza sativa Indica Group] |
RefSeq | NP_001149739.1 | 0 | 13 | 583 | 4 | 575 | protein HOTHEAD [Zea mays] |
RefSeq | XP_002454481.1 | 0 | 1 | 584 | 1 | 584 | hypothetical protein SORBIDRAFT_04g031910 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 35 | 579 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 35 | 579 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 35 | 579 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 35 | 579 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 35 | 579 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |