y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10019598m |
Family | AA3 |
Protein Properties | Length: 569 Molecular Weight: 62068.9 Isoelectric Point: 6.6571 |
Chromosome | Chromosome/Scaffold: 5 Start: 11032585 End: 11034835 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 40 | 566 | 0 |
APKLSHFDYIVIGGGTAGCALAATLSQNATVLVFERGGSPYDNPTATDIGNFVNTLLDTTPNSWSQLFISQDGVYNSRARVLGGGTVINAGFYSRAEEEF VAEAGLERAEVEAAYEWVEKKVVFEPQVKGWQSAFRDGLLEAGVTPNNGFTYEHIVGTKFSGIIFDPDGHRHTAANLLEYANPDNIVVYLHASVHKILFT IKGNERPKAYGVIFQDAGGVYHTAELATQDSIMNEVILSAGAIASPQLLMLSGVGPAAHLTAHGVNPVIVDHPMVGQGMADNPMHPVFIPSPEPVEVSLV QAVGITKFGSYIEGGSGLSLSISLTRSFLDAVLNLVKKTKLPMQPISKLFESLDLRLKVTTKAGVIIQKVNGPLSRGHLELRNTDPDDNPSVTFNYYQDP EDLNKCVEGFNTIIKVIESKGYSKYKYPGSSGRGLLNLILALPTNLRPRHITSAFDLKQYCKDTVMTIYHYHGGCQVGKVVDNDYKVLGIDALRVIDGST FLKSPGTNPQATIMMLGRYMGQKILRE |
Full Sequence |
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Protein Sequence Length: 569 Download |
MDFHNFRLLR CILVAVFFFH DSCYSDEAGK YSFMKDATLA PKLSHFDYIV IGGGTAGCAL 60 AATLSQNATV LVFERGGSPY DNPTATDIGN FVNTLLDTTP NSWSQLFISQ DGVYNSRARV 120 LGGGTVINAG FYSRAEEEFV AEAGLERAEV EAAYEWVEKK VVFEPQVKGW QSAFRDGLLE 180 AGVTPNNGFT YEHIVGTKFS GIIFDPDGHR HTAANLLEYA NPDNIVVYLH ASVHKILFTI 240 KGNERPKAYG VIFQDAGGVY HTAELATQDS IMNEVILSAG AIASPQLLML SGVGPAAHLT 300 AHGVNPVIVD HPMVGQGMAD NPMHPVFIPS PEPVEVSLVQ AVGITKFGSY IEGGSGLSLS 360 ISLTRSFLDA VLNLVKKTKL PMQPISKLFE SLDLRLKVTT KAGVIIQKVN GPLSRGHLEL 420 RNTDPDDNPS VTFNYYQDPE DLNKCVEGFN TIIKVIESKG YSKYKYPGSS GRGLLNLILA 480 LPTNLRPRHI TSAFDLKQYC KDTVMTIYHY HGGCQVGKVV DNDYKVLGID ALRVIDGSTF 540 LKSPGTNPQA TIMMLGRYMG QKILRERT* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 3.0e-22 | 45 | 320 | 332 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 4.0e-26 | 117 | 556 | 471 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
pfam05199 | GMC_oxred_C | 4.0e-26 | 412 | 556 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 3.0e-34 | 45 | 567 | 575 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 26 | 567 | 551 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11043.1 | 0 | 1 | 557 | 1 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB87405.1 | 0 | 1 | 557 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
RefSeq | NP_001119417.1 | 0 | 34 | 567 | 1 | 543 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 1 | 567 | 1 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 1 | 567 | 1 | 567 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 32 | 568 | 13 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 32 | 568 | 13 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 32 | 568 | 13 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 32 | 568 | 13 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 32 | 568 | 13 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |