y
Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi4g28870.1 |
Family | AA3 |
Protein Properties | Length: 592 Molecular Weight: 64252.4 Isoelectric Point: 9.6812 |
Chromosome | Chromosome/Scaffold: 4 Start: 34260817 End: 34265887 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 50 | 584 | 0 |
PTTRHATYDYIVIGGGTAGCPLAATLSLKYKVLLLERGGSPYGNRNVSYMENFHIGLSNMAPDSASQAFVSTDGVINARARVLGGGTCINAGFYSRASSS FVQDVGWDADLVNESYPWVEDKVVHWPKIAPWQAALRDGLVQAGVSPFNGYTYDHVSGTKVGGTIFDENGHRHTAADLLAAGDPNNLRVLLHASVHKIVF NSQQGRLKPRAIGVQFADEDGRLHQALLNNNRESEIIVSSGAIGSPQLLLLSGIGPKNDLKNHNIPVILHNKYVGKRMADNPMNSIFIPTKSPPRQSLIE TVGITGAGVFIEASSGFGQSSDSIHCHHGIMSAEIGQLSTVPPKQRSLELAKKYAQDKLNLPKEVFQGGFILEKIDGPLSTGHLVLIDTDVRNNPAVTFN YFSHPQDLSRCVYGIKTIEKILKTNRFAKLTPDAAGYEMERMLNMSVRANVNLIPKHTNTTESLEQFCKDTVITIWHYHGGCNVGKVVDQQHRVLGVSGL RVIDGSTFSRSPGTNPQATVMMMGRYFGVKILRGR |
Full Sequence |
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Protein Sequence Length: 592 Download |
MASSRRVIST SFIRVIVCLC FFRLSQGKGA AKQPFTLKNL PSLEKASSFP TTRHATYDYI 60 VIGGGTAGCP LAATLSLKYK VLLLERGGSP YGNRNVSYME NFHIGLSNMA PDSASQAFVS 120 TDGVINARAR VLGGGTCINA GFYSRASSSF VQDVGWDADL VNESYPWVED KVVHWPKIAP 180 WQAALRDGLV QAGVSPFNGY TYDHVSGTKV GGTIFDENGH RHTAADLLAA GDPNNLRVLL 240 HASVHKIVFN SQQGRLKPRA IGVQFADEDG RLHQALLNNN RESEIIVSSG AIGSPQLLLL 300 SGIGPKNDLK NHNIPVILHN KYVGKRMADN PMNSIFIPTK SPPRQSLIET VGITGAGVFI 360 EASSGFGQSS DSIHCHHGIM SAEIGQLSTV PPKQRSLELA KKYAQDKLNL PKEVFQGGFI 420 LEKIDGPLST GHLVLIDTDV RNNPAVTFNY FSHPQDLSRC VYGIKTIEKI LKTNRFAKLT 480 PDAAGYEMER MLNMSVRANV NLIPKHTNTT ESLEQFCKDT VITIWHYHGG CNVGKVVDQQ 540 HRVLGVSGLR VIDGSTFSRS PGTNPQATVM MMGRYFGVKI LRGRLGQAAG V* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 1.0e-26 | 56 | 329 | 320 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 3.0e-27 | 427 | 573 | 152 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 1.0e-34 | 58 | 584 | 598 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 4.0e-48 | 50 | 589 | 584 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 12 | 591 | 588 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF81814.1 | 0 | 25 | 591 | 28 | 591 | unknown [Zea mays] |
GenBank | ACG29139.1 | 0 | 25 | 591 | 27 | 590 | protein HOTHEAD precursor [Zea mays] |
GenBank | EAZ08804.1 | 0 | 1 | 591 | 1 | 585 | hypothetical protein OsI_31066 [Oryza sativa Indica Group] |
RefSeq | NP_001062996.1 | 0 | 1 | 591 | 1 | 585 | Os09g0363900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002462276.1 | 0 | 25 | 591 | 26 | 591 | hypothetical protein SORBIDRAFT_02g023010 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 54 | 584 | 24 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 54 | 584 | 24 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 54 | 584 | 24 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 54 | 584 | 24 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 54 | 584 | 24 | 518 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |