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Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10007216m |
Family | AA3 |
Protein Properties | Length: 571 Molecular Weight: 61774.3 Isoelectric Point: 7.8356 |
Chromosome | Chromosome/Scaffold: 5 Start: 11259763 End: 11262346 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 43 | 566 | 0 |
TTSYYDYIIIGGGTAGCPLAATLSQNASVLLLERGGAPYNNPNITMLSAFGAALSDLSEASPSQRFVSEDGVINARARVLGGGSALNAGFYTRAGTKYVR NMGWDGALANESYSWVEAKVAFQPPMGPWQTAVRDGLLEVGIVPNNGFTYDHINGTKFGGTIFDRDGHRHTAADLLEYADPKGITVLLHATVHRILFRTR GTTKPIANGVVYRDRTGQAHRAYLKEGSLNEIIVSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPHVGQGMYDNPMNAVFIPSPVPVEVSLIEVVGI TGEGTYVEAAGGENFGGGGGSGSSTRDYYAMFSPKATLLESNSMPKLSSAQPFQGGFILEKVMGPISTGHLELRTRNPNDNPVVTFNYFQNPDDLKRCVR GIQTIERVVQSKAFARFKYADMSFEYMLNLTASTPVNLRPRRSGPGASLPPSAEEFCQHTVTTIWHYHGGCVVGRVVDEDYQVIGIDQLRVIDMSTVGYC PGTNPQATVMMLGRYMGVKILRER |
Full Sequence |
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Protein Sequence Length: 571 Download |
MMMDRSWSWK FFASLILIIH SPICSCDKAP NYSFMRDATG SPTTSYYDYI IIGGGTAGCP 60 LAATLSQNAS VLLLERGGAP YNNPNITMLS AFGAALSDLS EASPSQRFVS EDGVINARAR 120 VLGGGSALNA GFYTRAGTKY VRNMGWDGAL ANESYSWVEA KVAFQPPMGP WQTAVRDGLL 180 EVGIVPNNGF TYDHINGTKF GGTIFDRDGH RHTAADLLEY ADPKGITVLL HATVHRILFR 240 TRGTTKPIAN GVVYRDRTGQ AHRAYLKEGS LNEIIVSAGT LGSPQLLMLS GVGPSAQLQA 300 QNITVVMDQP HVGQGMYDNP MNAVFIPSPV PVEVSLIEVV GITGEGTYVE AAGGENFGGG 360 GGSGSSTRDY YAMFSPKATL LESNSMPKLS SAQPFQGGFI LEKVMGPIST GHLELRTRNP 420 NDNPVVTFNY FQNPDDLKRC VRGIQTIERV VQSKAFARFK YADMSFEYML NLTASTPVNL 480 RPRRSGPGAS LPPSAEEFCQ HTVTTIWHYH GGCVVGRVVD EDYQVIGIDQ LRVIDMSTVG 540 YCPGTNPQAT VMMLGRYMGV KILRERLSKK * 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 5.0e-29 | 43 | 318 | 328 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 2.0e-31 | 48 | 555 | 552 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 4.0e-34 | 48 | 555 | 572 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 9.0e-43 | 47 | 566 | 570 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 10 | 570 | 592 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79648.1 | 0 | 35 | 570 | 1 | 539 | AC025416_22 F5O11.31 [Arabidopsis thaliana] |
GenBank | AAF88098.1 | 0 | 29 | 570 | 5 | 549 | AC025417_26 T12C24.11 [Arabidopsis thaliana] |
GenBank | AAL47442.1 | 0 | 2 | 570 | 1 | 572 | At1g12570/T12C24_9 [Arabidopsis thaliana] |
RefSeq | NP_172718.2 | 0 | 2 | 570 | 1 | 572 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002298074.1 | 0 | 3 | 570 | 1 | 573 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 33 | 566 | 13 | 517 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3gdp_A | 0 | 33 | 566 | 13 | 517 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3gdn_B | 0 | 33 | 566 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 33 | 566 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 33 | 566 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |